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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
472.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
394.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
293.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
262.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
253.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
237.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
225.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
221.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
220.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
219.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
206.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
193.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
191.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
190.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
174.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
171.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
171.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
165.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
165.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
163.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
161.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
158.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
157.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
153.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
152.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
152.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
151.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
151.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
148.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
148.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
146.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
146.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
145.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
144.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
142.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
142.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
141.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
135.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
134.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
130.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
128.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
127.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
126.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
120.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
120.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
114.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
114.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
113.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
110.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
109.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
108.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
108.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
107.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
106.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
105.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
105.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
104.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
102.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
102.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
101.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
99.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
99.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
97.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
97.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
96.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
94.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
94.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
92.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
89.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
89.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
89.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
89.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
89.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
88.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
88.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
87.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
86.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
86.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
84.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
84.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
83.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
82.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
82.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
81.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
80.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
80.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
80.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
79.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
79.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
78.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
78.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
78.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
77.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
77.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
76.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
75.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
75.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
74.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
73.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
73.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
72.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
71.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
71.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
70.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
69.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
69.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
69.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
69.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
68.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
67.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
67.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
67.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
66.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
64.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
63.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
63.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
62.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
62.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
61.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
61.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
61.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
60.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
59.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
58.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
56.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
54.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
54.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
54.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
54.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
54.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
52.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
52.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
51.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
50.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
50.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
50.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
47.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
47.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
47.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
46.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
40.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
39.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.8
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
624.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
425.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
412.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
403.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
395.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
341.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
339.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
333.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
324.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
276.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
269.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
268.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
252.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
248.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
240.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
230.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
220.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
202.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
200.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
197.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
194.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
186.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
179.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
174.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
173.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
171.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
170.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
166.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
163.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
155.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
154.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
153.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
151.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
147.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
145.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
139.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
138.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
138.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
132.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
130.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
127.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
126.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
126.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
125.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
122.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
120.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
119.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
117.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
115.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
114.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
114.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
113.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
112.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
112.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
111.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
108.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
106.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
105.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
105.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
105.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
104.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
102.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
98.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
96.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
95.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
91.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
89.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
89.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
85.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
84.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
84.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
84.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
83.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
81.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
81.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
81.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
80.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
80.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
79.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
78.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
77.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
76.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
76.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
76.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
75.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
75.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
74.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
73.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
69.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
69.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
68.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
67.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
66.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
65.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
64.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
63.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
63.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
63.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
59.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
58.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
57.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
57.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
57.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
55.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
52.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
52.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
50.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
49.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
49.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
49.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
48.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
48.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
46.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
44.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
43.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
43.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.6
285
Tumor
1.4
951
Tumor
1.4
537
Tumor
1.3
211
Tumor
1.2
1031
Tumor
1.1
661
Tumor
1.0
545
Tumor
1.0
921
Tumor
1.0
743
Tumor
0.9
283
Tumor
0.9
943
Tumor
0.9
367
Tumor
0.9
727
Tumor
0.9
385
Tumor
0.8
473
Tumor
0.8
517
Tumor
0.8
447
Tumor
0.8
351
Tumor
0.8
535
Tumor
0.8
923
Tumor
0.8
221
Tumor
0.8
553
Tumor
0.7
1025
Tumor
0.7
975
Tumor
0.7
355
Tumor
0.6
881
Tumor
0.6
917
Tumor
0.6
297
Tumor
0.6
277
Tumor
0.6
755
Tumor
0.6
1021
Tumor
0.6
463
Tumor
0.6
271
Tumor
0.6
937
Tumor
0.6
477
Tumor
0.5
814
Normal
0.5
131
Tumor
0.5
957
Tumor
0.5
523
Tumor
0.5
487
Tumor
0.5
963
Tumor
0.5
467
Tumor
0.5
161
Tumor
0.5
112
Tumor
0.5
525
Tumor
0.5
471
Tumor
0.4
227
Tumor
0.4
647
Tumor
0.4
695
Tumor
0.4
983
Tumor
0.4
883
Tumor
0.4
867
Tumor
0.4
567
Tumor
0.4
915
Tumor
0.4
967
Tumor
0.4
533
Tumor
0.4
171
Tumor
0.4
863
Tumor
0.4
715
Tumor
0.4
911
Tumor
0.4
492
Normal
0.4
724
Normal
0.4
483
Tumor
0.4
311
Tumor
0.4
697
Tumor
0.4
341
Tumor
0.4
443
Tumor
0.4
573
Tumor
0.4
977
Tumor
0.3
331
Tumor
0.3
413
Tumor
0.3
425
Tumor
0.3
873
Tumor
0.3
635
Tumor
0.3
861
Tumor
0.3
123
Tumor
0.3
431
Tumor
0.3
1043
Tumor
0.3
363
Tumor
0.3
737
Tumor
0.3
187
Tumor
0.3
877
Tumor
0.3
641
Tumor
0.3
955
Tumor
0.3
383
Tumor
0.3
411
Tumor
0.3
427
Tumor
0.3
785
Tumor
0.2
493
Tumor
0.2
444
Normal
0.2
497
Tumor
0.2
878
Normal
0.2
498
Normal
0.2
421
Tumor
0.2
391
Tumor
0.2
741
Tumor
0.2
433
Tumor
0.2
1041
Tumor
0.2
147
Tumor
0.2
488
Normal
0.2
213
Tumor
0.2
257
Tumor
0.2
484
Normal
0.1
865
Tumor
0.1
141
Tumor
0.1
864
Normal
0.1
445
Tumor
0.1
944
Normal
0.1
268
Normal
0.1
524
Normal
0.1
451
Tumor
0.1
966
Normal
0.1
135
Tumor
0.1
777
Tumor
0.1
866
Normal
0.1
415
Tumor
0.1
185
Tumor
0.1
813
Tumor
0.1
696
Normal
0.1
375
Tumor
0.1
327
Tumor
0.1
538
Normal
0.1
954
Normal
0.1
868
Normal
0.1
536
Normal
0.1
127
Tumor
0.1
137
Tumor
0.1
1015
Tumor
0.0
571
Tumor
0.0
744
Normal
0.0
481
Tumor
0.0
952
Normal
0.0
671
Tumor
0.0
455
Tumor
0.0
231
Tumor
0.0
434
Normal
0.0
953
Tumor
0.0
261
Tumor
0.0
554
Normal
0.0
435
Tumor
0.0
516
Normal
0.0
267
Tumor
0.0
478
Normal
0.0
472
Normal
0.0
618
Normal
0.0
862
Normal
0.0
217
Tumor
0.0
628
Normal
0.0
913
Tumor
0.0
882
Normal
0.0
482
Normal
0.0
874
Normal
0.0
448
Normal
0.0
412
Normal
0.0
617
Tumor
-0.1
313
Tumor
-0.1
456
Normal
-0.1
922
Normal
-0.1
465
Tumor
-0.1
1028
Normal
-0.1
527
Tumor
-0.1
384
Normal
-0.1
145
Tumor
-0.1
364
Normal
-0.1
982
Normal
-0.1
685
Tumor
-0.1
1013
Tumor
-0.1
557
Tumor
-0.1
981
Tumor
-0.1
214
Normal
-0.1
518
Normal
-0.1
714
Normal
-0.1
113
Tumor
-0.1
742
Normal
-0.1
546
Normal
-0.1
146
Normal
-0.1
665
Tumor
-0.1
142
Normal
-0.1
138
Normal
-0.1
1045
Tumor
-0.1
563
Tumor
-0.1
343
Tumor
-0.1
513
Tumor
-0.1
356
Normal
-0.1
474
Normal
-0.1
984
Normal
-0.1
738
Normal
-0.1
534
Normal
-0.1
1032
Normal
-0.1
462
Normal
-0.1
461
Tumor
-0.1
964
Normal
-0.1
468
Normal
-0.2
1026
Normal
-0.2
361
Tumor
-0.2
925
Tumor
-0.2
728
Normal
-0.2
958
Normal
-0.2
1016
Normal
-0.2
494
Normal
-0.2
884
Normal
-0.2
416
Normal
-0.2
357
Tumor
-0.2
716
Normal
-0.2
528
Normal
-0.2
464
Normal
-0.2
328
Normal
-0.2
136
Normal
-0.2
191
Tumor
-0.2
858
Normal
-0.2
514
Normal
-0.2
362
Normal
-0.2
125
Tumor
-0.2
851
Tumor
-0.2
491
Tumor
-0.2
956
Normal
-0.2
436
Normal
-0.2
344
Normal
-0.2
636
Normal
-0.2
663
Tumor
-0.2
192
Normal
-0.2
918
Normal
-0.2
393
Tumor
-0.2
916
Normal
-0.3
262
Normal
-0.3
976
Normal
-0.3
642
Normal
-0.3
352
Normal
-0.3
195
Tumor
-0.3
232
Normal
-0.3
515
Tumor
-0.3
924
Normal
-0.3
824
Normal
-0.3
926
Normal
-0.3
432
Normal
-0.3
968
Normal
-0.3
723
Tumor
-0.3
368
Normal
-0.3
284
Normal
-0.3
132
Normal
-0.3
672
Normal
-0.3
778
Normal
-0.3
366
Normal
-0.3
423
Tumor
-0.3
912
Normal
-0.3
616
Normal
-0.3
815
Tumor
-0.3
446
Normal
-0.3
1014
Normal
-0.3
312
Normal
-0.3
756
Normal
-0.3
1042
Normal
-0.3
914
Normal
-0.3
698
Normal
-0.3
978
Normal
-0.3
376
Normal
-0.3
228
Normal
-0.3
721
Tumor
-0.3
817
Tumor
-0.3
298
Normal
-0.4
938
Normal
-0.4
786
Normal
-0.4
162
Normal
-0.4
188
Normal
-0.4
1044
Normal
-0.4
387
Tumor
-0.4
686
Normal
-0.4
818
Normal
-0.4
224
Normal
-0.4
272
Normal
-0.4
212
Normal
-0.4
627
Tumor
-0.4
526
Normal
-0.4
365
Tumor
-0.4
558
Normal
-0.4
572
Normal
-0.4
722
Normal
-0.4
466
Normal
-0.4
852
Normal
-0.4
1046
Normal
-0.4
395
Tumor
-0.5
196
Normal
-0.5
258
Normal
-0.5
286
Normal
-0.5
857
Tumor
-0.5
392
Normal
-0.5
713
Tumor
-0.5
615
Tumor
-0.5
745
Tumor
-0.5
1027
Tumor
-0.5
186
Normal
-0.5
1022
Normal
-0.5
568
Normal
-0.5
148
Normal
-0.5
574
Normal
-0.5
124
Normal
-0.5
452
Normal
-0.5
422
Normal
-0.5
424
Normal
-0.5
386
Normal
-0.5
332
Normal
-0.5
414
Normal
-0.6
428
Normal
-0.6
342
Normal
-0.6
394
Normal
-0.6
126
Normal
-0.6
128
Normal
-0.6
816
Normal
-0.6
396
Normal
-0.6
278
Normal
-0.6
823
Tumor
-0.6
746
Normal
-0.7
426
Normal
-0.7
354
Normal
-0.7
218
Normal
-0.7
223
Tumor
-0.7
172
Normal
-0.7
664
Normal
-0.7
111
Normal
-0.7
388
Normal
-0.7
564
Normal
-0.7
222
Normal
-0.8
114
Normal
-0.8
358
Normal
-0.8
314
Normal
-0.8
666
Normal
-0.8
662
Normal
-0.8
353
Tumor
-0.9
648
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
