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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOM1L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
153.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
139.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
115.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
110.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
91.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
90.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
89.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
86.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
83.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
82.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
82.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
77.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
74.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
72.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
68.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
67.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
65.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
64.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
63.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
60.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
60.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
59.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
57.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
56.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
53.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
52.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
49.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
49.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
48.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
47.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
44.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
37.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
37.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOM1L1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
111.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
90.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
88.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
81.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
81.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
79.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
78.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
76.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
76.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
70.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
69.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
65.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
63.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
63.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
62.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
60.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
53.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
53.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
47.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
42.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
36.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
741
Tumor
1.2
1027
Tumor
1.2
515
Tumor
1.0
981
Tumor
1.0
777
Tumor
0.9
411
Tumor
0.9
745
Tumor
0.8
867
Tumor
0.8
911
Tumor
0.8
953
Tumor
0.7
487
Tumor
0.7
913
Tumor
0.7
533
Tumor
0.6
534
Normal
0.6
465
Tumor
0.6
513
Tumor
0.6
737
Tumor
0.6
685
Tumor
0.6
473
Tumor
0.6
131
Tumor
0.6
528
Normal
0.6
518
Normal
0.6
425
Tumor
0.5
527
Tumor
0.5
431
Tumor
0.5
756
Normal
0.5
517
Tumor
0.5
977
Tumor
0.5
635
Tumor
0.4
546
Normal
0.4
925
Tumor
0.4
714
Normal
0.4
755
Tumor
0.4
915
Tumor
0.4
171
Tumor
0.4
786
Normal
0.4
482
Normal
0.4
863
Tumor
0.4
912
Normal
0.4
868
Normal
0.4
1021
Tumor
0.4
257
Tumor
0.4
554
Normal
0.4
723
Tumor
0.4
433
Tumor
0.4
866
Normal
0.4
484
Normal
0.4
627
Tumor
0.4
873
Tumor
0.4
615
Tumor
0.4
695
Tumor
0.4
387
Tumor
0.4
147
Tumor
0.4
864
Normal
0.4
858
Normal
0.4
1045
Tumor
0.4
341
Tumor
0.3
862
Normal
0.3
448
Normal
0.3
472
Normal
0.3
1014
Normal
0.3
462
Normal
0.3
514
Normal
0.3
743
Tumor
0.3
636
Normal
0.3
494
Normal
0.3
356
Normal
0.3
477
Tumor
0.3
526
Normal
0.3
1022
Normal
0.3
882
Normal
0.3
436
Normal
0.3
361
Tumor
0.3
353
Tumor
0.3
474
Normal
0.3
488
Normal
0.3
481
Tumor
0.3
628
Normal
0.3
161
Tumor
0.3
663
Tumor
0.3
738
Normal
0.3
286
Normal
0.3
516
Normal
0.3
466
Normal
0.3
746
Normal
0.3
148
Normal
0.3
128
Normal
0.3
414
Normal
0.3
1046
Normal
0.3
722
Normal
0.3
1016
Normal
0.3
162
Normal
0.3
284
Normal
0.3
914
Normal
0.3
728
Normal
0.3
232
Normal
0.2
446
Normal
0.2
727
Tumor
0.2
884
Normal
0.2
196
Normal
0.2
468
Normal
0.2
616
Normal
0.2
314
Normal
0.2
944
Normal
0.2
918
Normal
0.2
137
Tumor
0.2
172
Normal
0.2
742
Normal
0.2
428
Normal
0.2
922
Normal
0.2
358
Normal
0.2
132
Normal
0.2
642
Normal
0.2
686
Normal
0.2
824
Normal
0.2
618
Normal
0.2
222
Normal
0.2
412
Normal
0.2
1041
Tumor
0.2
778
Normal
0.2
127
Tumor
0.2
815
Tumor
0.2
464
Normal
0.2
426
Normal
0.2
724
Normal
0.2
423
Tumor
0.2
696
Normal
0.2
212
Normal
0.2
278
Normal
0.2
1026
Normal
0.2
716
Normal
0.2
957
Tumor
0.2
1032
Normal
0.2
1042
Normal
0.1
564
Normal
0.1
982
Normal
0.1
427
Tumor
0.1
422
Normal
0.1
327
Tumor
0.1
271
Tumor
0.1
483
Tumor
0.1
186
Normal
0.1
785
Tumor
0.1
298
Normal
0.1
214
Normal
0.1
261
Tumor
0.1
432
Normal
0.1
698
Normal
0.1
272
Normal
0.1
926
Normal
0.1
648
Normal
0.1
573
Tumor
0.1
924
Normal
0.1
461
Tumor
0.1
357
Tumor
0.1
451
Tumor
0.1
964
Normal
0.1
978
Normal
0.1
923
Tumor
0.1
142
Normal
0.1
366
Normal
0.1
435
Tumor
0.1
394
Normal
0.1
362
Normal
0.1
213
Tumor
0.1
332
Normal
0.1
114
Normal
0.1
376
Normal
0.1
443
Tumor
0.1
816
Normal
0.1
647
Tumor
0.1
553
Tumor
0.1
136
Normal
0.1
452
Normal
0.0
313
Tumor
0.0
938
Normal
0.0
525
Tumor
0.0
228
Normal
0.0
124
Normal
0.0
365
Tumor
0.0
258
Normal
0.0
861
Tumor
0.0
878
Normal
0.0
312
Normal
0.0
818
Normal
0.0
218
Normal
0.0
328
Normal
0.0
568
Normal
0.0
572
Normal
0.0
354
Normal
0.0
111
Normal
0.0
1015
Tumor
0.0
664
Normal
0.0
262
Normal
0.0
297
Tumor
0.0
224
Normal
0.0
392
Normal
0.0
952
Normal
0.0
188
Normal
0.0
958
Normal
0.0
478
Normal
0.0
523
Tumor
0.0
424
Normal
0.0
393
Tumor
0.0
857
Tumor
0.0
492
Normal
0.0
558
Normal
0.0
445
Tumor
0.0
1028
Normal
0.0
138
Normal
0.0
342
Normal
-0.1
976
Normal
-0.1
126
Normal
-0.1
617
Tumor
-0.1
421
Tumor
-0.1
113
Tumor
-0.1
968
Normal
-0.1
364
Normal
-0.1
416
Normal
-0.1
916
Normal
-0.1
1043
Tumor
-0.1
984
Normal
-0.1
456
Normal
-0.1
231
Tumor
-0.1
123
Tumor
-0.1
965
Tumor
-0.1
874
Normal
-0.1
497
Tumor
-0.1
954
Normal
-0.1
883
Tumor
-0.1
571
Tumor
-0.1
545
Tumor
-0.1
563
Tumor
-0.1
344
Normal
-0.1
388
Normal
-0.1
368
Normal
-0.1
227
Tumor
-0.1
355
Tumor
-0.1
814
Normal
-0.1
415
Tumor
-0.2
852
Normal
-0.2
267
Tumor
-0.2
352
Normal
-0.2
963
Tumor
-0.2
268
Normal
-0.2
813
Tumor
-0.2
463
Tumor
-0.2
187
Tumor
-0.2
396
Normal
-0.2
384
Normal
-0.2
498
Normal
-0.2
1044
Normal
-0.2
666
Normal
-0.2
524
Normal
-0.2
285
Tumor
-0.2
817
Tumor
-0.2
331
Tumor
-0.2
125
Tumor
-0.2
351
Tumor
-0.2
434
Normal
-0.2
865
Tumor
-0.2
444
Normal
-0.2
538
Normal
-0.2
744
Normal
-0.2
955
Tumor
-0.2
662
Normal
-0.2
383
Tumor
-0.3
386
Normal
-0.3
195
Tumor
-0.3
146
Normal
-0.3
141
Tumor
-0.3
191
Tumor
-0.3
375
Tumor
-0.3
715
Tumor
-0.3
956
Normal
-0.3
112
Tumor
-0.3
574
Normal
-0.3
493
Tumor
-0.3
641
Tumor
-0.3
363
Tumor
-0.3
721
Tumor
-0.3
665
Tumor
-0.3
277
Tumor
-0.3
672
Normal
-0.3
471
Tumor
-0.4
223
Tumor
-0.4
567
Tumor
-0.4
921
Tumor
-0.4
713
Tumor
-0.4
1025
Tumor
-0.4
966
Normal
-0.4
217
Tumor
-0.5
145
Tumor
-0.5
455
Tumor
-0.5
536
Normal
-0.5
697
Tumor
-0.5
1031
Tumor
-0.5
283
Tumor
-0.5
192
Normal
-0.5
185
Tumor
-0.5
823
Tumor
-0.6
311
Tumor
-0.6
881
Tumor
-0.6
367
Tumor
-0.6
447
Tumor
-0.6
537
Tumor
-0.6
983
Tumor
-0.6
221
Tumor
-0.6
851
Tumor
-0.6
917
Tumor
-0.7
395
Tumor
-0.7
467
Tumor
-0.7
937
Tumor
-0.7
671
Tumor
-0.7
491
Tumor
-0.7
211
Tumor
-0.7
877
Tumor
-0.7
975
Tumor
-0.8
943
Tumor
-0.8
557
Tumor
-0.8
391
Tumor
-0.8
135
Tumor
-0.9
951
Tumor
-0.9
413
Tumor
-0.9
661
Tumor
-0.9
967
Tumor
-1.0
535
Tumor
-1.0
343
Tumor
-1.1
385
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
