We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GFOD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GFOD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
111
Normal
1.0
126
Normal
1.0
635
Tumor
0.9
114
Normal
0.9
388
Normal
0.8
394
Normal
0.8
124
Normal
0.7
526
Normal
0.7
396
Normal
0.7
128
Normal
0.7
123
Tumor
0.7
112
Tumor
0.7
627
Tumor
0.7
127
Tumor
0.7
515
Tumor
0.7
386
Normal
0.6
113
Tumor
0.6
392
Normal
0.6
425
Tumor
0.6
147
Tumor
0.6
912
Normal
0.6
863
Tumor
0.6
914
Normal
0.6
423
Tumor
0.6
224
Normal
0.6
524
Normal
0.5
445
Tumor
0.5
162
Normal
0.5
391
Tumor
0.5
428
Normal
0.5
516
Normal
0.5
286
Normal
0.5
513
Tumor
0.5
222
Normal
0.5
414
Normal
0.5
145
Tumor
0.5
672
Normal
0.5
424
Normal
0.5
666
Normal
0.5
426
Normal
0.5
487
Tumor
0.5
636
Normal
0.5
648
Normal
0.5
191
Tumor
0.5
922
Normal
0.4
527
Tumor
0.4
136
Normal
0.4
435
Tumor
0.4
514
Normal
0.4
358
Normal
0.4
278
Normal
0.4
926
Normal
0.4
146
Normal
0.4
664
Normal
0.4
618
Normal
0.4
148
Normal
0.4
125
Tumor
0.4
218
Normal
0.4
662
Normal
0.4
777
Tumor
0.4
138
Normal
0.4
1045
Tumor
0.4
368
Normal
0.4
356
Normal
0.4
172
Normal
0.4
132
Normal
0.4
196
Normal
0.4
616
Normal
0.4
212
Normal
0.4
944
Normal
0.4
628
Normal
0.4
284
Normal
0.4
452
Normal
0.4
214
Normal
0.4
464
Normal
0.4
186
Normal
0.4
882
Normal
0.4
858
Normal
0.4
823
Tumor
0.3
878
Normal
0.3
376
Normal
0.3
642
Normal
0.3
228
Normal
0.3
353
Tumor
0.3
415
Tumor
0.3
617
Tumor
0.3
954
Normal
0.3
824
Normal
0.3
436
Normal
0.3
911
Tumor
0.3
518
Normal
0.3
332
Normal
0.3
446
Normal
0.3
866
Normal
0.3
422
Normal
0.3
432
Normal
0.3
533
Tumor
0.3
484
Normal
0.3
525
Tumor
0.3
714
Normal
0.3
258
Normal
0.3
818
Normal
0.3
884
Normal
0.3
722
Normal
0.3
528
Normal
0.3
362
Normal
0.3
938
Normal
0.3
756
Normal
0.3
868
Normal
0.3
477
Tumor
0.3
488
Normal
0.3
366
Normal
0.3
427
Tumor
0.3
873
Tumor
0.2
924
Normal
0.2
874
Normal
0.2
466
Normal
0.2
314
Normal
0.2
141
Tumor
0.2
232
Normal
0.2
852
Normal
0.2
937
Tumor
0.2
686
Normal
0.2
1042
Normal
0.2
468
Normal
0.2
267
Tumor
0.2
744
Normal
0.2
192
Normal
0.2
188
Normal
0.2
482
Normal
0.2
433
Tumor
0.2
384
Normal
0.2
956
Normal
0.2
955
Tumor
0.2
952
Normal
0.2
721
Tumor
0.2
1046
Normal
0.2
456
Normal
0.2
778
Normal
0.2
327
Tumor
0.2
913
Tumor
0.2
352
Normal
0.2
864
Normal
0.2
1041
Tumor
0.2
862
Normal
0.2
312
Normal
0.2
328
Normal
0.2
261
Tumor
0.2
481
Tumor
0.2
558
Normal
0.1
867
Tumor
0.1
412
Normal
0.1
574
Normal
0.1
365
Tumor
0.1
554
Normal
0.1
918
Normal
0.1
354
Normal
0.1
395
Tumor
0.1
272
Normal
0.1
416
Normal
0.1
313
Tumor
0.1
696
Normal
0.1
185
Tumor
0.1
421
Tumor
0.1
364
Normal
0.1
494
Normal
0.1
361
Tumor
0.1
981
Tumor
0.1
1022
Normal
0.1
472
Normal
0.1
976
Normal
0.1
498
Normal
0.1
342
Normal
0.1
262
Normal
0.1
546
Normal
0.1
434
Normal
0.1
916
Normal
0.1
698
Normal
0.1
137
Tumor
0.1
1028
Normal
0.1
716
Normal
0.1
816
Normal
0.1
742
Normal
0.1
462
Normal
0.0
1032
Normal
0.0
755
Tumor
0.0
268
Normal
0.0
1016
Normal
0.0
964
Normal
0.0
344
Normal
0.0
461
Tumor
0.0
534
Normal
0.0
283
Tumor
0.0
723
Tumor
0.0
564
Normal
0.0
968
Normal
0.0
465
Tumor
0.0
171
Tumor
0.0
444
Normal
0.0
1026
Normal
0.0
483
Tumor
0.0
1014
Normal
0.0
187
Tumor
0.0
217
Tumor
0.0
492
Normal
0.0
728
Normal
0.0
538
Normal
0.0
745
Tumor
0.0
568
Normal
0.0
958
Normal
0.0
925
Tumor
0.0
161
Tumor
0.0
984
Normal
0.0
135
Tumor
0.0
393
Tumor
0.0
523
Tumor
0.0
741
Tumor
0.0
298
Normal
0.0
387
Tumor
0.0
861
Tumor
-0.1
738
Normal
-0.1
572
Normal
-0.1
982
Normal
-0.1
665
Tumor
-0.1
663
Tumor
-0.1
142
Normal
-0.1
231
Tumor
-0.1
355
Tumor
-0.1
448
Normal
-0.1
341
Tumor
-0.1
957
Tumor
-0.1
478
Normal
-0.1
857
Tumor
-0.1
474
Normal
-0.1
746
Normal
-0.1
615
Tumor
-0.1
1044
Normal
-0.1
966
Normal
-0.1
536
Normal
-0.1
471
Tumor
-0.1
383
Tumor
-0.1
917
Tumor
-0.2
213
Tumor
-0.2
571
Tumor
-0.2
713
Tumor
-0.2
786
Normal
-0.2
343
Tumor
-0.2
563
Tumor
-0.2
785
Tumor
-0.2
557
Tumor
-0.2
978
Normal
-0.2
451
Tumor
-0.2
443
Tumor
-0.2
195
Tumor
-0.2
915
Tumor
-0.2
227
Tumor
-0.2
715
Tumor
-0.2
375
Tumor
-0.2
277
Tumor
-0.3
221
Tumor
-0.3
814
Normal
-0.3
883
Tumor
-0.3
223
Tumor
-0.3
493
Tumor
-0.3
813
Tumor
-0.3
455
Tumor
-0.3
647
Tumor
-0.3
641
Tumor
-0.3
1025
Tumor
-0.3
413
Tumor
-0.3
975
Tumor
-0.3
1015
Tumor
-0.3
297
Tumor
-0.3
943
Tumor
-0.3
517
Tumor
-0.3
671
Tumor
-0.3
697
Tumor
-0.3
727
Tumor
-0.3
743
Tumor
-0.4
411
Tumor
-0.4
921
Tumor
-0.4
977
Tumor
-0.4
331
Tumor
-0.4
385
Tumor
-0.4
695
Tumor
-0.4
467
Tumor
-0.4
881
Tumor
-0.4
257
Tumor
-0.4
431
Tumor
-0.4
1043
Tumor
-0.4
271
Tumor
-0.4
211
Tumor
-0.4
357
Tumor
-0.4
963
Tumor
-0.4
497
Tumor
-0.5
491
Tumor
-0.5
311
Tumor
-0.5
545
Tumor
-0.5
967
Tumor
-0.5
737
Tumor
-0.5
463
Tumor
-0.5
685
Tumor
-0.5
447
Tumor
-0.5
661
Tumor
-0.5
535
Tumor
-0.5
1027
Tumor
-0.6
877
Tumor
-0.6
865
Tumor
-0.6
553
Tumor
-0.6
1013
Tumor
-0.6
367
Tumor
-0.6
724
Normal
-0.6
567
Tumor
-0.6
285
Tumor
-0.6
923
Tumor
-0.6
363
Tumor
-0.6
573
Tumor
-0.7
953
Tumor
-0.7
951
Tumor
-0.7
1031
Tumor
-0.7
473
Tumor
-0.8
131
Tumor
-0.8
537
Tumor
-0.9
1021
Tumor
-0.9
965
Tumor
-1.0
817
Tumor
-1.1
983
Tumor
-1.2
351
Tumor
-1.2
851
Tumor
-1.2
815
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
