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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPS3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
63.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPS3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
133.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
54.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
685
Tumor
0.6
965
Tumor
0.6
957
Tumor
0.5
285
Tumor
0.5
313
Tumor
0.5
261
Tumor
0.4
1013
Tumor
0.4
327
Tumor
0.4
131
Tumor
0.4
283
Tumor
0.4
777
Tumor
0.4
815
Tumor
0.4
743
Tumor
0.4
123
Tumor
0.3
137
Tumor
0.3
147
Tumor
0.3
715
Tumor
0.3
915
Tumor
0.3
1043
Tumor
0.3
223
Tumor
0.3
195
Tumor
0.3
745
Tumor
0.3
967
Tumor
0.3
567
Tumor
0.2
755
Tumor
0.2
877
Tumor
0.2
557
Tumor
0.2
411
Tumor
0.2
351
Tumor
0.2
737
Tumor
0.2
517
Tumor
0.2
1021
Tumor
0.2
746
Normal
0.2
435
Tumor
0.2
1022
Normal
0.2
527
Tumor
0.2
981
Tumor
0.2
818
Normal
0.2
497
Tumor
0.2
924
Normal
0.2
724
Normal
0.2
192
Normal
0.2
1026
Normal
0.2
493
Tumor
0.2
738
Normal
0.2
257
Tumor
0.1
425
Tumor
0.1
222
Normal
0.1
756
Normal
0.1
128
Normal
0.1
778
Normal
0.1
865
Tumor
0.1
363
Tumor
0.1
482
Normal
0.1
955
Tumor
0.1
436
Normal
0.1
492
Normal
0.1
744
Normal
0.1
353
Tumor
0.1
331
Tumor
0.1
741
Tumor
0.1
858
Normal
0.1
535
Tumor
0.1
663
Tumor
0.1
227
Tumor
0.1
412
Normal
0.1
472
Normal
0.1
462
Normal
0.1
272
Normal
0.1
456
Normal
0.1
516
Normal
0.1
113
Tumor
0.1
952
Normal
0.1
214
Normal
0.1
514
Normal
0.1
864
Normal
0.1
1032
Normal
0.1
523
Tumor
0.1
545
Tumor
0.1
132
Normal
0.1
477
Tumor
0.1
874
Normal
0.1
355
Tumor
0.1
697
Tumor
0.1
188
Normal
0.1
447
Tumor
0.1
866
Normal
0.1
513
Tumor
0.1
146
Normal
0.1
448
Normal
0.1
525
Tumor
0.1
786
Normal
0.1
416
Normal
0.1
135
Tumor
0.1
474
Normal
0.1
463
Tumor
0.1
364
Normal
0.1
145
Tumor
0.1
136
Normal
0.1
191
Tumor
0.1
481
Tumor
0.1
851
Tumor
0.1
162
Normal
0.1
882
Normal
0.1
698
Normal
0.1
862
Normal
0.1
278
Normal
0.1
976
Normal
0.1
966
Normal
0.0
1044
Normal
0.0
434
Normal
0.0
186
Normal
0.0
114
Normal
0.0
518
Normal
0.0
196
Normal
0.0
466
Normal
0.0
922
Normal
0.0
1025
Tumor
0.0
824
Normal
0.0
212
Normal
0.0
218
Normal
0.0
217
Tumor
0.0
455
Tumor
0.0
742
Normal
0.0
328
Normal
0.0
944
Normal
0.0
332
Normal
0.0
428
Normal
0.0
852
Normal
0.0
881
Tumor
0.0
298
Normal
0.0
478
Normal
0.0
124
Normal
0.0
148
Normal
0.0
342
Normal
0.0
375
Tumor
0.0
473
Tumor
0.0
526
Normal
0.0
484
Normal
0.0
553
Tumor
0.0
467
Tumor
0.0
661
Tumor
0.0
111
Normal
0.0
696
Normal
0.0
975
Tumor
0.0
277
Tumor
0.0
713
Tumor
0.0
953
Tumor
0.0
816
Normal
0.0
172
Normal
0.0
982
Normal
0.0
728
Normal
0.0
341
Tumor
0.0
414
Normal
0.0
1028
Normal
0.0
356
Normal
0.0
873
Tumor
0.0
138
Normal
0.0
141
Tumor
0.0
916
Normal
0.0
228
Normal
0.0
635
Tumor
0.0
914
Normal
0.0
491
Tumor
0.0
546
Normal
0.0
536
Normal
0.0
213
Tumor
0.0
926
Normal
0.0
387
Tumor
0.0
722
Normal
0.0
878
Normal
0.0
937
Tumor
0.0
628
Normal
0.0
813
Tumor
0.0
358
Normal
0.0
171
Tumor
0.0
686
Normal
0.0
857
Tumor
0.0
271
Tumor
0.0
918
Normal
0.0
451
Tumor
0.0
884
Normal
0.0
185
Tumor
0.0
258
Normal
0.0
1042
Normal
0.0
344
Normal
0.0
286
Normal
0.0
524
Normal
0.0
938
Normal
0.0
367
Tumor
0.0
422
Normal
0.0
923
Tumor
0.0
431
Tumor
0.0
868
Normal
0.0
554
Normal
0.0
925
Tumor
0.0
262
Normal
0.0
231
Tumor
0.0
912
Normal
0.0
538
Normal
0.0
314
Normal
0.0
494
Normal
0.0
1031
Tumor
0.0
312
Normal
0.0
424
Normal
0.0
221
Tumor
0.0
863
Tumor
0.0
461
Tumor
0.0
1046
Normal
0.0
571
Tumor
0.0
883
Tumor
0.0
977
Tumor
0.0
498
Normal
0.0
352
Normal
-0.1
615
Tumor
-0.1
956
Normal
-0.1
161
Tumor
-0.1
393
Tumor
-0.1
386
Normal
-0.1
126
Normal
-0.1
483
Tumor
-0.1
211
Tumor
-0.1
388
Normal
-0.1
488
Normal
-0.1
964
Normal
-0.1
464
Normal
-0.1
394
Normal
-0.1
963
Tumor
-0.1
695
Tumor
-0.1
468
Normal
-0.1
452
Normal
-0.1
618
Normal
-0.1
983
Tumor
-0.1
421
Tumor
-0.1
642
Normal
-0.1
426
Normal
-0.1
1016
Normal
-0.1
354
Normal
-0.1
727
Tumor
-0.1
537
Tumor
-0.1
515
Tumor
-0.1
432
Normal
-0.1
268
Normal
-0.1
395
Tumor
-0.1
1014
Normal
-0.1
641
Tumor
-0.1
723
Tumor
-0.1
943
Tumor
-0.1
366
Normal
-0.1
415
Tumor
-0.1
142
Normal
-0.1
814
Normal
-0.1
362
Normal
-0.1
427
Tumor
-0.1
984
Normal
-0.1
534
Normal
-0.1
573
Tumor
-0.1
954
Normal
-0.1
361
Tumor
-0.1
297
Tumor
-0.1
284
Normal
-0.1
232
Normal
-0.1
376
Normal
-0.1
392
Normal
-0.1
368
Normal
-0.1
558
Normal
-0.1
867
Tumor
-0.1
648
Normal
-0.1
978
Normal
-0.1
861
Tumor
-0.1
471
Tumor
-0.1
911
Tumor
-0.1
396
Normal
-0.1
465
Tumor
-0.1
365
Tumor
-0.1
528
Normal
-0.1
665
Tumor
-0.1
636
Normal
-0.1
413
Tumor
-0.1
716
Normal
-0.1
714
Normal
-0.1
187
Tumor
-0.2
125
Tumor
-0.2
533
Tumor
-0.2
311
Tumor
-0.2
917
Tumor
-0.2
664
Normal
-0.2
721
Tumor
-0.2
385
Tumor
-0.2
446
Normal
-0.2
662
Normal
-0.2
785
Tumor
-0.2
445
Tumor
-0.2
968
Normal
-0.2
224
Normal
-0.2
951
Tumor
-0.2
1015
Tumor
-0.2
443
Tumor
-0.2
666
Normal
-0.2
444
Normal
-0.2
617
Tumor
-0.2
672
Normal
-0.2
127
Tumor
-0.2
112
Tumor
-0.2
921
Tumor
-0.2
487
Tumor
-0.2
616
Normal
-0.2
343
Tumor
-0.2
958
Normal
-0.2
383
Tumor
-0.2
671
Tumor
-0.2
1045
Tumor
-0.2
823
Tumor
-0.2
574
Normal
-0.2
267
Tumor
-0.2
423
Tumor
-0.2
384
Normal
-0.2
647
Tumor
-0.2
563
Tumor
-0.2
433
Tumor
-0.3
357
Tumor
-0.3
1041
Tumor
-0.3
913
Tumor
-0.3
568
Normal
-0.3
564
Normal
-0.3
627
Tumor
-0.3
572
Normal
-0.3
391
Tumor
-0.3
817
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
