MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:13.7 nTPM
GTEx:8.7 nTPM
FANTOM5:16.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.0
2586 Male, age 75, left hemisphere 14.9
2019 Male, age 18, unknown 14.1
1830 Male, age 51, unknown 13.7
1833 Male, age 53, unknown 12.1
2666 Male, age 74, left hemisphere 12.0
1870 Female, age 42, unknown 11.7
2828 Female, age 72, unknown 11.5
1827 Male, age 72, unknown 11.4
2411 Female, age 72, unknown 9.9
2219 Male, age 76, both hemispheres 9.2
Dorsal raphe nucleus
nTPM: 11.5
1828 Male, age 53, unknown 12.4
2750 Male, age 76, both hemispheres 12.0
2016 Female, age 72, unknown 11.4
2298 Female, age 72, unknown 11.0
2047 Male, age 72, unknown 10.6
Inferior colliculus
nTPM: 10.8
1848 Female, age 42, unknown 12.2
1890 Male, age 53, unknown 10.8
2849 Male, age 72, unknown 10.7
2097 Female, age 72, unknown 9.5
Median raphe nucleus
nTPM: 11.2
2220 Male, age 76, midline 11.2
Periaquaductal grey, anterior
nTPM: 11.0
1947 Male, age 18, unknown 12.6
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 11.1
1831 Male, age 72, unknown 12.8
2464 Female, age 72, unknown 12.6
2850 Male, age 76, both hemispheres 10.4
1840 Male, age 53, unknown 8.7
Periaquaductal grey, lateral
nTPM: 9.9
2140 Male, age 76, both hemispheres 11.3
2053 Male, age 18, unknown 10.3
2272 Male, age 74, both hemispheres 8.2
Pretectal area
nTPM: 11.7
2316 Male, age 76, right hemisphere 16.0
2407 Male, age 75, both hemispheres 14.6
1815 Male, age 53, unknown 12.3
2667 Female, age 75, unknown 11.8
2224 Female, age 72, unknown 11.5
1944 Female, age 72, unknown 11.1
2007 Male, age 72, unknown 10.8
2825 Male, age 18, unknown 10.8
1816 Male, age 51, unknown 10.5
1817 Female, age 42, unknown 10.5
2273 Male, age 74, both hemispheres 9.3
Red nucleus
nTPM: 13.7
1904 Male, age 53, unknown 16.7
2769 Male, age 72, unknown 15.5
1865 Male, age 51, unknown 15.0
2823 Male, age 76, right hemisphere 14.3
1954 Female, age 42, unknown 14.1
2725 Female, age 75, unknown 13.9
2588 Male, age 74, left hemisphere 13.5
1821 Female, age 72, unknown 13.1
2227 Male, age 72, unknown 12.9
2503 Female, age 72, unknown 12.5
2584 Male, age 75, left hemisphere 12.4
2785 Male, age 18, unknown 10.5
Substantia nigra
nTPM: 12.5
2409 Female, age 72, unknown 19.9
2699 Male, age 18, unknown 14.0
2583 Male, age 75, right hemisphere 13.0
2241 Male, age 72, unknown 12.9
2590 Female, age 75, unknown 12.1
1851 Male, age 51, unknown 11.4
2665 Male, age 74, both hemispheres 10.7
1916 Female, age 42, unknown 10.6
1941 Male, age 53, unknown 10.4
1889 Female, age 72, unknown 10.3
Superior colliculus
nTPM: 12.0
1913 Female, age 42, unknown 14.2
1895 Male, age 76, right hemisphere 13.3
2587 Male, age 74, left hemisphere 12.9
2668 Female, age 75, unknown 12.4
1796 Male, age 53, unknown 12.2
1839 Male, age 51, unknown 11.9
1995 Male, age 72, unknown 11.0
2087 Female, age 72, unknown 10.9
2664 Male, age 75, both hemispheres 10.8
2261 Male, age 18, unknown 10.4
Ventral tegmental area
nTPM: 12.3
2218 Male, age 76, both hemispheres 13.2
1942 Male, age 51, unknown 12.6
2021 Male, age 53, unknown 12.5
2410 Female, age 72, unknown 12.5
2223 Female, age 72, unknown 12.1
1915 Female, age 42, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 17.1
Min nTPM: 4.0
Std nTPM: 2.9
Median nTPM: 8.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 17.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 16.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 15.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

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