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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMTM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
82.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
72.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMTM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
164.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
114.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
66.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
1.9
367
Tumor
1.8
661
Tumor
1.7
815
Tumor
1.6
283
Tumor
1.5
311
Tumor
1.4
545
Tumor
1.2
851
Tumor
1.1
285
Tumor
1.1
967
Tumor
1.1
817
Tumor
1.1
455
Tumor
1.1
563
Tumor
1.0
363
Tumor
0.9
917
Tumor
0.9
823
Tumor
0.9
331
Tumor
0.9
492
Normal
0.9
943
Tumor
0.9
297
Tumor
0.8
916
Normal
0.8
211
Tumor
0.8
963
Tumor
0.8
921
Tumor
0.8
355
Tumor
0.8
343
Tumor
0.8
727
Tumor
0.8
498
Normal
0.7
413
Tumor
0.7
538
Normal
0.7
536
Normal
0.7
391
Tumor
0.7
383
Tumor
0.7
444
Normal
0.7
375
Tumor
0.7
857
Tumor
0.6
351
Tumor
0.6
975
Tumor
0.6
852
Normal
0.6
141
Tumor
0.6
491
Tumor
0.6
313
Tumor
0.6
277
Tumor
0.5
713
Tumor
0.5
135
Tumor
0.5
671
Tumor
0.5
537
Tumor
0.5
553
Tumor
0.5
421
Tumor
0.5
461
Tumor
0.5
965
Tumor
0.5
524
Normal
0.5
778
Normal
0.5
145
Tumor
0.5
471
Tumor
0.5
814
Normal
0.5
958
Normal
0.4
192
Normal
0.4
954
Normal
0.4
968
Normal
0.4
966
Normal
0.4
124
Normal
0.4
617
Tumor
0.4
146
Normal
0.4
697
Tumor
0.4
554
Normal
0.4
743
Tumor
0.4
478
Normal
0.4
1025
Tumor
0.4
368
Normal
0.4
672
Normal
0.4
666
Normal
0.4
213
Tumor
0.4
525
Tumor
0.4
268
Normal
0.3
573
Tumor
0.3
861
Tumor
0.3
223
Tumor
0.3
138
Normal
0.3
517
Tumor
0.3
365
Tumor
0.3
191
Tumor
0.3
925
Tumor
0.3
1045
Tumor
0.3
923
Tumor
0.3
574
Normal
0.3
447
Tumor
0.3
312
Normal
0.3
415
Tumor
0.3
881
Tumor
0.2
434
Normal
0.2
262
Normal
0.2
284
Normal
0.2
126
Normal
0.2
558
Normal
0.2
716
Normal
0.2
641
Tumor
0.2
387
Tumor
0.2
913
Tumor
0.2
212
Normal
0.2
137
Tumor
0.2
572
Normal
0.2
125
Tumor
0.2
883
Tumor
0.2
493
Tumor
0.2
224
Normal
0.2
433
Tumor
0.1
483
Tumor
0.1
114
Normal
0.1
217
Tumor
0.1
463
Tumor
0.1
813
Tumor
0.1
384
Normal
0.1
1028
Normal
0.1
1046
Normal
0.1
924
Normal
0.1
272
Normal
0.1
546
Normal
0.1
785
Tumor
0.1
922
Normal
0.1
877
Tumor
0.1
686
Normal
0.1
938
Normal
0.1
868
Normal
0.1
385
Tumor
0.1
662
Normal
0.1
957
Tumor
0.1
874
Normal
0.1
462
Normal
0.1
918
Normal
0.1
696
Normal
0.0
952
Normal
0.0
866
Normal
0.0
136
Normal
0.0
721
Tumor
0.0
816
Normal
0.0
878
Normal
0.0
467
Tumor
0.0
113
Tumor
0.0
628
Normal
0.0
494
Normal
0.0
362
Normal
0.0
278
Normal
0.0
1044
Normal
0.0
956
Normal
0.0
976
Normal
0.0
111
Normal
0.0
1031
Tumor
0.0
497
Tumor
0.0
533
Tumor
0.0
964
Normal
0.0
142
Normal
0.0
664
Normal
0.0
344
Normal
0.0
218
Normal
0.0
627
Tumor
0.0
818
Normal
0.0
474
Normal
0.0
364
Normal
0.0
412
Normal
-0.1
1042
Normal
-0.1
926
Normal
-0.1
416
Normal
-0.1
528
Normal
-0.1
724
Normal
-0.1
516
Normal
-0.1
867
Tumor
-0.1
564
Normal
-0.1
195
Tumor
-0.1
557
Tumor
-0.1
744
Normal
-0.1
571
Tumor
-0.1
472
Normal
-0.1
737
Tumor
-0.1
187
Tumor
-0.1
864
Normal
-0.1
258
Normal
-0.1
214
Normal
-0.1
567
Tumor
-0.1
786
Normal
-0.1
132
Normal
-0.1
366
Normal
-0.1
518
Normal
-0.1
352
Normal
-0.1
456
Normal
-0.1
648
Normal
-0.1
188
Normal
-0.1
448
Normal
-0.1
432
Normal
-0.1
128
Normal
-0.2
715
Tumor
-0.2
714
Normal
-0.2
698
Normal
-0.2
534
Normal
-0.2
261
Tumor
-0.2
914
Normal
-0.2
484
Normal
-0.2
884
Normal
-0.2
912
Normal
-0.2
1027
Tumor
-0.2
1026
Normal
-0.2
862
Normal
-0.2
1032
Normal
-0.2
424
Normal
-0.2
327
Tumor
-0.2
514
Normal
-0.2
298
Normal
-0.2
232
Normal
-0.2
422
Normal
-0.3
332
Normal
-0.3
951
Tumor
-0.3
1022
Normal
-0.3
376
Normal
-0.3
873
Tumor
-0.3
915
Tumor
-0.3
477
Tumor
-0.3
526
Normal
-0.3
1021
Tumor
-0.3
228
Normal
-0.3
466
Normal
-0.3
728
Normal
-0.3
196
Normal
-0.3
527
Tumor
-0.3
647
Tumor
-0.3
423
Tumor
-0.3
1043
Tumor
-0.3
858
Normal
-0.3
665
Tumor
-0.3
314
Normal
-0.4
738
Normal
-0.4
863
Tumor
-0.4
328
Normal
-0.4
618
Normal
-0.4
436
Normal
-0.4
411
Tumor
-0.4
937
Tumor
-0.4
468
Normal
-0.4
354
Normal
-0.4
386
Normal
-0.4
227
Tumor
-0.4
446
Normal
-0.4
1041
Tumor
-0.4
452
Normal
-0.4
746
Normal
-0.4
568
Normal
-0.4
185
Tumor
-0.4
162
Normal
-0.4
824
Normal
-0.4
222
Normal
-0.4
221
Tumor
-0.4
231
Tumor
-0.4
427
Tumor
-0.4
515
Tumor
-0.4
488
Normal
-0.4
271
Tumor
-0.4
435
Tumor
-0.4
481
Tumor
-0.4
361
Tumor
-0.4
482
Normal
-0.5
635
Tumor
-0.5
756
Normal
-0.5
131
Tumor
-0.5
341
Tumor
-0.5
464
Normal
-0.5
615
Tumor
-0.5
642
Normal
-0.5
342
Normal
-0.5
426
Normal
-0.5
865
Tumor
-0.5
944
Normal
-0.5
685
Tumor
-0.5
392
Normal
-0.5
353
Tumor
-0.5
286
Normal
-0.5
722
Normal
-0.5
428
Normal
-0.6
172
Normal
-0.6
267
Tumor
-0.6
112
Tumor
-0.6
395
Tumor
-0.6
882
Normal
-0.6
414
Normal
-0.6
955
Tumor
-0.6
636
Normal
-0.6
396
Normal
-0.7
742
Normal
-0.7
148
Normal
-0.7
755
Tumor
-0.7
616
Normal
-0.7
356
Normal
-0.7
451
Tumor
-0.7
358
Normal
-0.7
663
Tumor
-0.7
257
Tumor
-0.7
425
Tumor
-0.7
443
Tumor
-0.7
394
Normal
-0.8
161
Tumor
-0.8
127
Tumor
-0.8
777
Tumor
-0.8
147
Tumor
-0.8
745
Tumor
-0.8
953
Tumor
-0.9
445
Tumor
-0.9
123
Tumor
-0.9
431
Tumor
-0.9
388
Normal
-0.9
723
Tumor
-0.9
911
Tumor
-1.0
186
Normal
-1.0
473
Tumor
-1.0
513
Tumor
-1.1
695
Tumor
-1.1
357
Tumor
-1.1
487
Tumor
-1.2
523
Tumor
-1.3
465
Tumor
-1.6
171
Tumor
-1.8
393
Tumor
-2.0
741
Tumor
-2.2
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
