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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
98.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
80.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
79.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
65.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
63.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
52.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
50.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
40.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
123.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
69.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
62.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.4
911
Tumor
1.4
227
Tumor
1.3
391
Tumor
1.2
465
Tumor
1.0
627
Tumor
1.0
913
Tumor
1.0
1041
Tumor
1.0
1045
Tumor
1.0
477
Tumor
0.9
867
Tumor
0.9
423
Tumor
0.9
362
Normal
0.8
526
Normal
0.8
557
Tumor
0.8
353
Tumor
0.8
191
Tumor
0.8
261
Tumor
0.8
533
Tumor
0.7
232
Normal
0.7
641
Tumor
0.7
363
Tumor
0.7
1042
Normal
0.7
424
Normal
0.7
868
Normal
0.7
272
Normal
0.7
428
Normal
0.7
1046
Normal
0.7
468
Normal
0.7
635
Tumor
0.6
954
Normal
0.6
755
Tumor
0.6
662
Normal
0.6
937
Tumor
0.6
642
Normal
0.6
722
Normal
0.6
448
Normal
0.6
364
Normal
0.6
482
Normal
0.6
268
Normal
0.6
456
Normal
0.6
636
Normal
0.6
416
Normal
0.6
422
Normal
0.6
524
Normal
0.6
262
Normal
0.6
1028
Normal
0.6
857
Tumor
0.6
384
Normal
0.5
498
Normal
0.5
861
Tumor
0.5
866
Normal
0.5
426
Normal
0.5
132
Normal
0.5
878
Normal
0.5
1031
Tumor
0.5
628
Normal
0.5
494
Normal
0.5
824
Normal
0.5
956
Normal
0.5
964
Normal
0.5
714
Normal
0.5
312
Normal
0.5
572
Normal
0.5
716
Normal
0.5
224
Normal
0.5
366
Normal
0.5
926
Normal
0.5
474
Normal
0.5
564
Normal
0.5
648
Normal
0.5
884
Normal
0.5
136
Normal
0.5
267
Tumor
0.4
666
Normal
0.4
882
Normal
0.4
386
Normal
0.4
212
Normal
0.4
464
Normal
0.4
978
Normal
0.4
481
Tumor
0.4
922
Normal
0.4
698
Normal
0.4
616
Normal
0.4
228
Normal
0.4
686
Normal
0.4
713
Tumor
0.4
388
Normal
0.4
354
Normal
0.4
376
Normal
0.4
327
Tumor
0.4
916
Normal
0.4
568
Normal
0.4
218
Normal
0.4
915
Tumor
0.4
955
Tumor
0.4
436
Normal
0.4
412
Normal
0.4
141
Tumor
0.4
864
Normal
0.4
1032
Normal
0.4
534
Normal
0.3
514
Normal
0.3
415
Tumor
0.3
672
Normal
0.3
925
Tumor
0.3
1014
Normal
0.3
332
Normal
0.3
231
Tumor
0.3
982
Normal
0.3
976
Normal
0.3
1016
Normal
0.3
696
Normal
0.3
328
Normal
0.3
685
Tumor
0.3
786
Normal
0.3
472
Normal
0.3
478
Normal
0.3
546
Normal
0.3
944
Normal
0.3
723
Tumor
0.3
358
Normal
0.3
361
Tumor
0.3
466
Normal
0.3
1026
Normal
0.3
563
Tumor
0.3
918
Normal
0.3
148
Normal
0.3
258
Normal
0.3
618
Normal
0.3
571
Tumor
0.3
574
Normal
0.3
172
Normal
0.3
471
Tumor
0.3
196
Normal
0.3
387
Tumor
0.3
142
Normal
0.3
516
Normal
0.3
816
Normal
0.3
342
Normal
0.3
278
Normal
0.3
128
Normal
0.3
874
Normal
0.3
411
Tumor
0.3
444
Normal
0.2
462
Normal
0.2
192
Normal
0.2
952
Normal
0.2
818
Normal
0.2
392
Normal
0.2
1022
Normal
0.2
914
Normal
0.2
356
Normal
0.2
746
Normal
0.2
492
Normal
0.2
298
Normal
0.2
113
Tumor
0.2
858
Normal
0.2
188
Normal
0.2
286
Normal
0.2
432
Normal
0.2
452
Normal
0.2
558
Normal
0.2
742
Normal
0.2
1044
Normal
0.2
484
Normal
0.2
434
Normal
0.2
414
Normal
0.2
446
Normal
0.2
968
Normal
0.2
451
Tumor
0.2
341
Tumor
0.2
483
Tumor
0.2
138
Normal
0.2
664
Normal
0.2
615
Tumor
0.1
738
Normal
0.1
222
Normal
0.1
777
Tumor
0.1
536
Normal
0.1
528
Normal
0.1
966
Normal
0.1
963
Tumor
0.1
467
Tumor
0.1
951
Tumor
0.1
984
Normal
0.1
958
Normal
0.1
368
Normal
0.1
493
Tumor
0.1
518
Normal
0.1
352
Normal
0.1
186
Normal
0.1
187
Tumor
0.1
617
Tumor
0.1
162
Normal
0.1
862
Normal
0.1
938
Normal
0.1
394
Normal
0.1
728
Normal
0.1
778
Normal
0.0
525
Tumor
0.0
488
Normal
0.0
214
Normal
0.0
344
Normal
0.0
1027
Tumor
0.0
124
Normal
0.0
284
Normal
0.0
756
Normal
0.0
513
Tumor
0.0
852
Normal
0.0
1013
Tumor
0.0
912
Normal
0.0
487
Tumor
0.0
137
Tumor
0.0
665
Tumor
0.0
314
Normal
0.0
741
Tumor
0.0
663
Tumor
0.0
185
Tumor
0.0
217
Tumor
0.0
744
Normal
0.0
695
Tumor
0.0
921
Tumor
0.0
126
Normal
0.0
396
Normal
-0.1
977
Tumor
-0.1
114
Normal
-0.1
721
Tumor
-0.1
724
Normal
-0.1
383
Tumor
-0.1
924
Normal
-0.1
863
Tumor
-0.1
271
Tumor
-0.1
111
Normal
-0.1
881
Tumor
-0.1
647
Tumor
-0.1
975
Tumor
-0.1
195
Tumor
-0.1
161
Tumor
-0.2
421
Tumor
-0.2
433
Tumor
-0.2
145
Tumor
-0.2
123
Tumor
-0.2
538
Normal
-0.2
814
Normal
-0.2
463
Tumor
-0.2
127
Tumor
-0.2
1021
Tumor
-0.2
1015
Tumor
-0.2
967
Tumor
-0.2
953
Tumor
-0.2
427
Tumor
-0.2
785
Tumor
-0.3
112
Tumor
-0.3
567
Tumor
-0.3
257
Tumor
-0.3
873
Tumor
-0.3
1025
Tumor
-0.3
223
Tumor
-0.3
883
Tumor
-0.3
443
Tumor
-0.3
715
Tumor
-0.3
554
Normal
-0.3
135
Tumor
-0.3
823
Tumor
-0.3
171
Tumor
-0.3
435
Tumor
-0.3
727
Tumor
-0.3
517
Tumor
-0.3
461
Tumor
-0.3
365
Tumor
-0.3
277
Tumor
-0.4
331
Tumor
-0.4
393
Tumor
-0.4
447
Tumor
-0.4
375
Tumor
-0.4
146
Normal
-0.4
515
Tumor
-0.4
745
Tumor
-0.4
917
Tumor
-0.4
523
Tumor
-0.4
553
Tumor
-0.4
473
Tumor
-0.4
923
Tumor
-0.4
527
Tumor
-0.5
957
Tumor
-0.5
431
Tumor
-0.5
813
Tumor
-0.5
535
Tumor
-0.5
413
Tumor
-0.5
943
Tumor
-0.6
357
Tumor
-0.6
497
Tumor
-0.6
671
Tumor
-0.6
355
Tumor
-0.6
573
Tumor
-0.6
661
Tumor
-0.6
297
Tumor
-0.6
851
Tumor
-0.6
817
Tumor
-0.6
147
Tumor
-0.6
351
Tumor
-0.7
877
Tumor
-0.7
213
Tumor
-0.7
965
Tumor
-0.7
425
Tumor
-0.7
491
Tumor
-0.7
221
Tumor
-0.7
1043
Tumor
-0.7
983
Tumor
-0.7
445
Tumor
-0.7
697
Tumor
-0.7
343
Tumor
-0.8
545
Tumor
-0.8
367
Tumor
-0.8
395
Tumor
-0.8
865
Tumor
-0.8
455
Tumor
-0.9
815
Tumor
-0.9
125
Tumor
-0.9
385
Tumor
-0.9
537
Tumor
-1.0
737
Tumor
-1.0
131
Tumor
-1.0
285
Tumor
-1.1
311
Tumor
-1.2
313
Tumor
-1.3
743
Tumor
-1.3
283
Tumor
-1.4
211
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
