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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIFC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
185.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
146.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
137.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
92.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
91.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
90.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
87.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
63.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
62.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
52.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
43.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIFC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
123.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
100.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
77.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
65.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
41.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
0.7
635
Tumor
0.7
877
Tumor
0.7
285
Tumor
0.6
911
Tumor
0.6
563
Tumor
0.6
261
Tumor
0.6
123
Tumor
0.6
567
Tumor
0.6
214
Normal
0.5
473
Tumor
0.5
878
Normal
0.5
113
Tumor
0.5
883
Tumor
0.5
671
Tumor
0.5
951
Tumor
0.5
884
Normal
0.5
627
Tumor
0.5
218
Normal
0.5
277
Tumor
0.4
746
Normal
0.4
267
Tumor
0.4
571
Tumor
0.4
564
Normal
0.4
914
Normal
0.4
851
Tumor
0.4
545
Tumor
0.4
527
Tumor
0.4
1021
Tumor
0.4
131
Tumor
0.4
867
Tumor
0.4
913
Tumor
0.4
868
Normal
0.4
574
Normal
0.3
815
Tumor
0.3
721
Tumor
0.3
1013
Tumor
0.3
114
Normal
0.3
456
Normal
0.3
262
Normal
0.3
964
Normal
0.3
395
Tumor
0.3
647
Tumor
0.3
452
Normal
0.3
912
Normal
0.3
223
Tumor
0.3
147
Tumor
0.3
111
Normal
0.3
863
Tumor
0.3
124
Normal
0.3
351
Tumor
0.3
1043
Tumor
0.3
227
Tumor
0.3
464
Normal
0.3
387
Tumor
0.3
881
Tumor
0.3
537
Tumor
0.3
813
Tumor
0.3
515
Tumor
0.3
268
Normal
0.3
697
Tumor
0.3
112
Tumor
0.3
713
Tumor
0.3
367
Tumor
0.2
745
Tumor
0.2
955
Tumor
0.2
126
Normal
0.2
641
Tumor
0.2
1028
Normal
0.2
385
Tumor
0.2
172
Normal
0.2
573
Tumor
0.2
916
Normal
0.2
283
Tumor
0.2
513
Tumor
0.2
535
Tumor
0.2
715
Tumor
0.2
127
Tumor
0.2
444
Normal
0.2
313
Tumor
0.2
368
Normal
0.2
968
Normal
0.2
468
Normal
0.2
466
Normal
0.2
977
Tumor
0.2
525
Tumor
0.2
331
Tumor
0.2
744
Normal
0.2
1014
Normal
0.2
341
Tumor
0.1
528
Normal
0.1
553
Tumor
0.1
128
Normal
0.1
873
Tumor
0.1
162
Normal
0.1
297
Tumor
0.1
568
Normal
0.1
921
Tumor
0.1
425
Tumor
0.1
685
Tumor
0.1
882
Normal
0.1
533
Tumor
0.1
696
Normal
0.1
258
Normal
0.1
963
Tumor
0.1
917
Tumor
0.1
738
Normal
0.1
743
Tumor
0.1
665
Tumor
0.1
785
Tumor
0.1
978
Normal
0.1
617
Tumor
0.1
777
Tumor
0.1
786
Normal
0.1
817
Tumor
0.1
447
Tumor
0.1
451
Tumor
0.1
518
Normal
0.1
976
Normal
0.1
135
Tumor
0.1
778
Normal
0.1
1045
Tumor
0.1
937
Tumor
0.1
861
Tumor
0.1
546
Normal
0.1
982
Normal
0.1
391
Tumor
0.1
981
Tumor
0.1
187
Tumor
0.1
742
Normal
0.1
615
Tumor
0.1
1015
Tumor
0.1
171
Tumor
0.0
188
Normal
0.0
966
Normal
0.0
413
Tumor
0.0
741
Tumor
0.0
1016
Normal
0.0
125
Tumor
0.0
952
Normal
0.0
526
Normal
0.0
814
Normal
0.0
448
Normal
0.0
816
Normal
0.0
534
Normal
0.0
446
Normal
0.0
983
Tumor
0.0
864
Normal
0.0
755
Tumor
0.0
554
Normal
0.0
663
Tumor
0.0
925
Tumor
0.0
434
Normal
0.0
1044
Normal
0.0
924
Normal
0.0
1022
Normal
0.0
572
Normal
0.0
557
Tumor
0.0
1026
Normal
0.0
393
Tumor
0.0
1041
Tumor
0.0
353
Tumor
0.0
918
Normal
0.0
723
Tumor
0.0
938
Normal
0.0
724
Normal
0.0
231
Tumor
0.0
628
Normal
0.0
958
Normal
0.0
436
Normal
0.0
728
Normal
0.0
327
Tumor
0.0
823
Tumor
0.0
426
Normal
0.0
422
Normal
0.0
161
Tumor
0.0
217
Tumor
0.0
271
Tumor
0.0
862
Normal
0.0
523
Tumor
0.0
428
Normal
0.0
221
Tumor
0.0
698
Normal
0.0
866
Normal
0.0
642
Normal
-0.1
824
Normal
-0.1
343
Tumor
-0.1
474
Normal
-0.1
432
Normal
-0.1
386
Normal
-0.1
455
Tumor
-0.1
618
Normal
-0.1
482
Normal
-0.1
965
Tumor
-0.1
423
Tumor
-0.1
984
Normal
-0.1
232
Normal
-0.1
185
Tumor
-0.1
874
Normal
-0.1
956
Normal
-0.1
472
Normal
-0.1
1031
Tumor
-0.1
137
Tumor
-0.1
461
Tumor
-0.1
392
Normal
-0.1
954
Normal
-0.1
416
Normal
-0.1
356
Normal
-0.1
517
Tumor
-0.1
975
Tumor
-0.1
477
Tumor
-0.1
462
Normal
-0.1
286
Normal
-0.1
424
Normal
-0.1
538
Normal
-0.1
923
Tumor
-0.1
396
Normal
-0.1
536
Normal
-0.1
756
Normal
-0.1
257
Tumor
-0.1
465
Tumor
-0.1
616
Normal
-0.1
852
Normal
-0.1
467
Tumor
-0.1
186
Normal
-0.1
421
Tumor
-0.1
361
Tumor
-0.1
427
Tumor
-0.1
865
Tumor
-0.1
686
Normal
-0.1
857
Tumor
-0.1
433
Tumor
-0.1
944
Normal
-0.1
1046
Normal
-0.1
516
Normal
-0.1
926
Normal
-0.1
445
Tumor
-0.2
524
Normal
-0.2
342
Normal
-0.2
357
Tumor
-0.2
148
Normal
-0.2
922
Normal
-0.2
558
Normal
-0.2
716
Normal
-0.2
967
Tumor
-0.2
722
Normal
-0.2
272
Normal
-0.2
858
Normal
-0.2
481
Tumor
-0.2
284
Normal
-0.2
487
Tumor
-0.2
463
Tumor
-0.2
943
Tumor
-0.2
365
Tumor
-0.2
388
Normal
-0.2
1032
Normal
-0.2
1027
Tumor
-0.2
196
Normal
-0.2
714
Normal
-0.2
412
Normal
-0.2
213
Tumor
-0.2
414
Normal
-0.2
394
Normal
-0.2
488
Normal
-0.2
672
Normal
-0.2
514
Normal
-0.2
362
Normal
-0.2
478
Normal
-0.2
818
Normal
-0.2
212
Normal
-0.2
737
Tumor
-0.2
383
Tumor
-0.2
415
Tumor
-0.2
364
Normal
-0.2
228
Normal
-0.3
344
Normal
-0.3
328
Normal
-0.3
1042
Normal
-0.3
636
Normal
-0.3
435
Tumor
-0.3
494
Normal
-0.3
211
Tumor
-0.3
376
Normal
-0.3
358
Normal
-0.3
311
Tumor
-0.3
491
Tumor
-0.3
278
Normal
-0.3
312
Normal
-0.3
443
Tumor
-0.3
366
Normal
-0.3
915
Tumor
-0.3
664
Normal
-0.3
411
Tumor
-0.3
431
Tumor
-0.4
352
Normal
-0.4
375
Tumor
-0.4
484
Normal
-0.4
224
Normal
-0.4
471
Tumor
-0.4
695
Tumor
-0.4
662
Normal
-0.4
666
Normal
-0.4
142
Normal
-0.4
648
Normal
-0.4
498
Normal
-0.4
141
Tumor
-0.4
483
Tumor
-0.4
384
Normal
-0.4
492
Normal
-0.4
298
Normal
-0.5
354
Normal
-0.5
145
Tumor
-0.5
661
Tumor
-0.5
195
Tumor
-0.5
957
Tumor
-0.5
191
Tumor
-0.5
363
Tumor
-0.5
136
Normal
-0.5
332
Normal
-0.5
493
Tumor
-0.5
727
Tumor
-0.5
497
Tumor
-0.6
138
Normal
-0.6
355
Tumor
-0.6
314
Normal
-0.6
953
Tumor
-0.7
192
Normal
-0.7
132
Normal
-0.7
222
Normal
-0.8
146
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
