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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UQCRC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
323.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
256.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
229.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
224.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
198.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
187.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
183.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
182.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
174.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
168.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
166.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
163.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
161.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
155.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
151.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
150.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
147.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
146.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
146.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
144.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
143.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
143.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
143.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
141.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
138.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
135.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
135.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
132.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
132.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
132.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
132.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
131.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
130.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
128.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
127.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
127.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
125.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
125.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
125.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
124.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
122.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
122.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
122.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
120.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
119.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
118.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
117.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
117.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
117.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
116.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
116.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
116.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
115.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
114.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
113.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
113.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
113.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
113.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
112.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
110.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
109.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
108.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
108.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
107.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
107.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
107.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
107.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
106.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
106.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
105.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
105.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
105.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
104.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
104.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
104.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
103.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
103.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
103.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
103.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
102.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
102.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
101.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
100.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
100.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
99.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
99.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
98.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
98.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
98.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
97.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
97.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
97.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
96.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
96.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
96.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
96.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
96.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
95.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
95.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
95.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
95.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
95.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
94.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
94.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
94.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
93.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
93.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
93.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
93.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
92.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
91.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
91.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
91.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
91.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
90.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
90.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
90.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
90.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
89.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
88.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
87.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
87.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
87.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
86.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
86.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
85.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
85.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
85.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
85.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
85.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
85.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
85.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
85.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
84.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
84.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
84.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
84.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
83.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
83.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
83.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
83.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
82.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
81.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
81.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
81.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
80.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
80.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
80.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
80.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
79.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
79.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
79.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
79.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
79.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
79.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
78.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
78.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
78.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
78.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
78.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
78.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
77.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
77.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
76.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
75.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
75.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
74.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
74.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
74.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
73.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
72.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
71.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
71.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
71.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
71.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
71.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
70.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
70.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
69.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
69.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
68.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
68.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
68.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
68.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
67.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
67.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
66.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
66.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
66.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
65.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
65.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
65.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
64.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
64.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
64.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
62.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
61.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
61.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
61.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
60.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
60.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
60.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
59.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
58.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
58.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
57.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
55.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
54.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
54.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
53.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
52.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
52.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
51.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
51.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
51.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
45.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
45.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
45.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
44.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
44.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
43.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
42.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
37.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UQCRC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
282.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
267.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
265.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
260.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
216.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
200.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
196.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
193.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
165.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
155.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
154.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
153.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
153.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
143.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
137.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
136.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
136.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
136.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
133.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
131.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
130.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
130.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
130.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
130.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
129.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
128.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
127.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
125.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
125.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
125.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
125.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
124.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
124.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
124.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
122.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
122.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
122.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
121.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
120.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
120.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
119.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
118.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
117.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
117.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
117.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
117.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
116.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
115.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
115.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
114.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
114.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
114.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
113.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
113.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
112.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
112.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
111.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
110.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
110.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
110.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
110.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
109.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
109.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
108.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
107.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
106.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
105.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
105.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
105.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
103.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
102.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
102.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
102.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
102.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
101.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
100.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
100.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
99.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
99.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
98.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
97.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
97.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
97.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
97.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
96.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
96.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
95.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
95.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
95.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
95.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
94.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
93.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
93.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
93.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
93.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
92.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
92.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
92.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
92.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
92.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
90.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
89.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
88.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
88.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
88.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
87.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
87.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
86.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
86.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
86.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
86.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
86.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
85.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
85.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
85.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
84.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
84.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
84.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
83.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
82.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
82.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
81.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
81.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
81.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
81.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
81.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
80.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
80.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
78.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
78.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
76.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
76.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
75.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
74.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
74.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
73.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
73.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
72.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
71.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
71.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
71.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
71.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
68.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
66.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
65.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
65.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
64.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
63.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
62.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
62.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
61.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
61.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
60.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
59.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
58.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
56.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
54.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
51.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
51.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
49.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
47.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
46.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
41.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.2
571
Tumor
0.8
227
Tumor
0.8
231
Tumor
0.7
423
Tumor
0.6
745
Tumor
0.6
713
Tumor
0.6
915
Tumor
0.6
636
Normal
0.6
867
Tumor
0.5
1041
Tumor
0.5
912
Normal
0.5
911
Tumor
0.5
487
Tumor
0.5
411
Tumor
0.4
648
Normal
0.4
145
Tumor
0.4
172
Normal
0.4
868
Normal
0.4
557
Tumor
0.4
862
Normal
0.4
742
Normal
0.4
128
Normal
0.4
388
Normal
0.4
466
Normal
0.4
491
Tumor
0.4
824
Normal
0.4
922
Normal
0.4
462
Normal
0.4
615
Tumor
0.4
394
Normal
0.4
452
Normal
0.4
635
Tumor
0.3
435
Tumor
0.3
392
Normal
0.3
882
Normal
0.3
864
Normal
0.3
723
Tumor
0.3
451
Tumor
0.3
1032
Normal
0.3
982
Normal
0.3
746
Normal
0.3
616
Normal
0.3
162
Normal
0.3
1043
Tumor
0.3
356
Normal
0.3
196
Normal
0.3
1014
Normal
0.3
327
Tumor
0.3
981
Tumor
0.3
448
Normal
0.3
228
Normal
0.3
278
Normal
0.3
564
Normal
0.3
818
Normal
0.3
686
Normal
0.3
376
Normal
0.3
666
Normal
0.3
328
Normal
0.3
786
Normal
0.3
878
Normal
0.3
914
Normal
0.3
698
Normal
0.3
738
Normal
0.3
546
Normal
0.3
214
Normal
0.3
342
Normal
0.3
954
Normal
0.3
298
Normal
0.3
436
Normal
0.3
642
Normal
0.3
534
Normal
0.3
944
Normal
0.2
618
Normal
0.2
756
Normal
0.2
816
Normal
0.2
426
Normal
0.2
344
Normal
0.2
755
Tumor
0.2
488
Normal
0.2
314
Normal
0.2
482
Normal
0.2
358
Normal
0.2
628
Normal
0.2
1046
Normal
0.2
938
Normal
0.2
924
Normal
0.2
858
Normal
0.2
722
Normal
0.2
258
Normal
0.2
428
Normal
0.2
341
Tumor
0.2
728
Normal
0.2
1045
Tumor
0.2
267
Tumor
0.2
416
Normal
0.2
664
Normal
0.2
171
Tumor
0.2
111
Normal
0.2
232
Normal
0.2
424
Normal
0.2
332
Normal
0.2
465
Tumor
0.2
1026
Normal
0.2
568
Normal
0.2
138
Normal
0.2
414
Normal
0.2
484
Normal
0.2
132
Normal
0.2
984
Normal
0.2
554
Normal
0.2
1022
Normal
0.2
572
Normal
0.2
866
Normal
0.2
286
Normal
0.2
354
Normal
0.2
978
Normal
0.2
148
Normal
0.2
663
Tumor
0.2
964
Normal
0.2
528
Normal
0.2
222
Normal
0.2
468
Normal
0.2
284
Normal
0.2
472
Normal
0.2
926
Normal
0.2
422
Normal
0.2
714
Normal
0.2
695
Tumor
0.1
142
Normal
0.1
685
Tumor
0.1
721
Tumor
0.1
396
Normal
0.1
874
Normal
0.1
368
Normal
0.1
558
Normal
0.1
1028
Normal
0.1
432
Normal
0.1
186
Normal
0.1
464
Normal
0.1
114
Normal
0.1
955
Tumor
0.1
224
Normal
0.1
364
Normal
0.1
514
Normal
0.1
976
Normal
0.1
696
Normal
0.1
1042
Normal
0.1
393
Tumor
0.1
925
Tumor
0.1
1025
Tumor
0.1
716
Normal
0.1
526
Normal
0.1
518
Normal
0.1
366
Normal
0.1
1044
Normal
0.1
112
Tumor
0.1
1016
Normal
0.1
481
Tumor
0.1
662
Normal
0.1
352
Normal
0.1
446
Normal
0.1
212
Normal
0.1
113
Tumor
0.1
778
Normal
0.1
852
Normal
0.1
958
Normal
0.1
474
Normal
0.1
968
Normal
0.1
884
Normal
0.1
1013
Tumor
0.1
873
Tumor
0.1
744
Normal
0.1
494
Normal
0.1
195
Tumor
0.1
272
Normal
0.1
218
Normal
0.1
262
Normal
0.0
127
Tumor
0.0
538
Normal
0.0
516
Normal
0.0
361
Tumor
0.0
918
Normal
0.0
431
Tumor
0.0
136
Normal
0.0
573
Tumor
0.0
386
Normal
0.0
641
Tumor
0.0
456
Normal
0.0
524
Normal
0.0
574
Normal
0.0
223
Tumor
0.0
124
Normal
0.0
268
Normal
0.0
473
Tumor
0.0
741
Tumor
0.0
916
Normal
0.0
384
Normal
0.0
433
Tumor
0.0
966
Normal
0.0
952
Normal
0.0
537
Tumor
0.0
483
Tumor
0.0
525
Tumor
0.0
861
Tumor
0.0
913
Tumor
0.0
126
Normal
0.0
312
Normal
0.0
513
Tumor
0.0
161
Tumor
0.0
313
Tumor
0.0
257
Tumor
-0.1
353
Tumor
-0.1
672
Normal
-0.1
188
Normal
-0.1
478
Normal
-0.1
477
Tumor
-0.1
146
Normal
-0.1
956
Normal
-0.1
563
Tumor
-0.1
923
Tumor
-0.1
665
Tumor
-0.1
1015
Tumor
-0.1
191
Tumor
-0.1
957
Tumor
-0.1
434
Normal
-0.1
387
Tumor
-0.1
444
Normal
-0.1
863
Tumor
-0.1
412
Normal
-0.1
937
Tumor
-0.1
365
Tumor
-0.1
617
Tumor
-0.1
261
Tumor
-0.1
187
Tumor
-0.1
415
Tumor
-0.1
953
Tumor
-0.1
777
Tumor
-0.2
135
Tumor
-0.2
498
Normal
-0.2
363
Tumor
-0.2
461
Tumor
-0.2
492
Normal
-0.2
185
Tumor
-0.2
427
Tumor
-0.2
217
Tumor
-0.2
192
Normal
-0.2
221
Tumor
-0.2
785
Tumor
-0.2
813
Tumor
-0.2
857
Tumor
-0.2
727
Tumor
-0.2
395
Tumor
-0.2
553
Tumor
-0.3
123
Tumor
-0.3
1027
Tumor
-0.3
715
Tumor
-0.3
963
Tumor
-0.3
1031
Tumor
-0.3
357
Tumor
-0.3
536
Normal
-0.3
743
Tumor
-0.3
141
Tumor
-0.3
647
Tumor
-0.3
467
Tumor
-0.3
355
Tumor
-0.3
814
Normal
-0.3
362
Normal
-0.3
567
Tumor
-0.3
147
Tumor
-0.4
271
Tumor
-0.4
865
Tumor
-0.4
977
Tumor
-0.4
517
Tumor
-0.4
213
Tumor
-0.4
697
Tumor
-0.4
413
Tumor
-0.4
277
Tumor
-0.4
1021
Tumor
-0.4
883
Tumor
-0.4
137
Tumor
-0.4
383
Tumor
-0.4
515
Tumor
-0.5
447
Tumor
-0.5
445
Tumor
-0.5
881
Tumor
-0.5
523
Tumor
-0.5
965
Tumor
-0.5
497
Tumor
-0.5
367
Tumor
-0.5
851
Tumor
-0.5
443
Tumor
-0.5
297
Tumor
-0.5
421
Tumor
-0.5
471
Tumor
-0.5
533
Tumor
-0.5
493
Tumor
-0.5
975
Tumor
-0.6
877
Tumor
-0.6
671
Tumor
-0.6
921
Tumor
-0.6
331
Tumor
-0.6
823
Tumor
-0.6
391
Tumor
-0.6
943
Tumor
-0.6
351
Tumor
-0.6
343
Tumor
-0.6
815
Tumor
-0.6
125
Tumor
-0.6
967
Tumor
-0.6
817
Tumor
-0.7
425
Tumor
-0.7
375
Tumor
-0.7
917
Tumor
-0.8
527
Tumor
-0.8
983
Tumor
-0.8
463
Tumor
-0.8
211
Tumor
-0.8
455
Tumor
-0.8
951
Tumor
-0.9
724
Normal
-0.9
311
Tumor
-0.9
535
Tumor
-0.9
385
Tumor
-0.9
737
Tumor
-0.9
285
Tumor
-1.0
661
Tumor
-1.0
131
Tumor
-1.1
545
Tumor
-1.2
283
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
