MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA Brain:94.1 nTPM
GTEx:35.2 nTPM
FANTOM5:132.2 Scaled Tags Per Million
Pig:94.1 nTPM
Mouse:136.7 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 94.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.9
1870 Female, age 42, unknown 92.0
1833 Male, age 53, unknown 89.3
1827 Male, age 72, unknown 88.9
2411 Female, age 72, unknown 86.0
1830 Male, age 51, unknown 85.6
2666 Male, age 74, left hemisphere 84.6
2219 Male, age 76, both hemispheres 82.9
2828 Female, age 72, unknown 81.5
2586 Male, age 75, left hemisphere 69.1
2019 Male, age 18, unknown 68.8
Dorsal raphe nucleus
nTPM: 89.8
2298 Female, age 72, unknown 96.2
2750 Male, age 76, both hemispheres 94.5
2047 Male, age 72, unknown 93.2
2016 Female, age 72, unknown 83.5
1828 Male, age 53, unknown 81.5
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 88.9
1848 Female, age 42, unknown 87.6
2849 Male, age 72, unknown 87.3
1890 Male, age 53, unknown 80.5
Median raphe nucleus
nTPM: 93.6
2220 Male, age 76, midline 93.6
Periaquaductal grey, anterior
nTPM: 94.1
1947 Male, age 18, unknown 114.8
1795 Male, age 51, unknown 84.1
2502 Female, age 75, unknown 83.3
Periaquaductal grey, dorsal
nTPM: 87.6
2850 Male, age 76, both hemispheres 94.7
1840 Male, age 53, unknown 88.6
2464 Female, age 72, unknown 84.4
1831 Male, age 72, unknown 82.7
Periaquaductal grey, lateral
nTPM: 86.6
2272 Male, age 74, both hemispheres 92.3
2053 Male, age 18, unknown 85.8
2140 Male, age 76, both hemispheres 81.8
Pretectal area
nTPM: 89.2
1816 Male, age 51, unknown 102.2
1944 Female, age 72, unknown 101.2
2667 Female, age 75, unknown 95.9
2224 Female, age 72, unknown 92.8
2273 Male, age 74, both hemispheres 92.4
2825 Male, age 18, unknown 89.1
2407 Male, age 75, both hemispheres 87.0
1817 Female, age 42, unknown 81.6
1815 Male, age 53, unknown 81.3
2316 Male, age 76, right hemisphere 78.9
2007 Male, age 72, unknown 78.8
Red nucleus
nTPM: 81.2
2725 Female, age 75, unknown 87.1
1904 Male, age 53, unknown 85.1
1821 Female, age 72, unknown 84.5
2584 Male, age 75, left hemisphere 82.5
2588 Male, age 74, left hemisphere 82.4
2823 Male, age 76, right hemisphere 82.1
1865 Male, age 51, unknown 81.4
1954 Female, age 42, unknown 80.1
2769 Male, age 72, unknown 79.3
2227 Male, age 72, unknown 79.2
2503 Female, age 72, unknown 75.5
2785 Male, age 18, unknown 75.4
Substantia nigra
nTPM: 88.8
2241 Male, age 72, unknown 112.3
2409 Female, age 72, unknown 91.9
1889 Female, age 72, unknown 90.7
1941 Male, age 53, unknown 88.8
1916 Female, age 42, unknown 88.0
2583 Male, age 75, right hemisphere 86.4
1851 Male, age 51, unknown 86.3
2590 Female, age 75, unknown 86.2
2699 Male, age 18, unknown 82.0
2665 Male, age 74, both hemispheres 75.2
Superior colliculus
nTPM: 85.1
2261 Male, age 18, unknown 96.1
1895 Male, age 76, right hemisphere 89.3
1796 Male, age 53, unknown 88.1
2087 Female, age 72, unknown 86.9
2587 Male, age 74, left hemisphere 86.7
1913 Female, age 42, unknown 84.2
2668 Female, age 75, unknown 83.9
2664 Male, age 75, both hemispheres 83.8
1839 Male, age 51, unknown 78.9
1995 Male, age 72, unknown 73.3
Ventral tegmental area
nTPM: 90.4
2021 Male, age 53, unknown 96.7
2410 Female, age 72, unknown 92.7
1942 Male, age 51, unknown 91.9
2218 Male, age 76, both hemispheres 89.4
2223 Female, age 72, unknown 85.9
1915 Female, age 42, unknown 85.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 58.2
Min nTPM: 22.2
Std nTPM: 5.8
Median nTPM: 34.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 58.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 51.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 44.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 44.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 44.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.2
FF:10158-103A5 76 years, female 132.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.9
Samples: 4

Max nTPM: 102.2
Min nTPM: 75.6
Sample A Female 95.7
Sample B Female 75.6
Sample C Male 102.2
Sample D Male 78.2
Midbrain
nTPM: 94.2
Samples: 4

Max nTPM: 105.7
Min nTPM: 86.6
Sample A Female 105.7
Sample B Female 86.6
Sample C Male 91.9
Sample D Male 92.4
Periaqueductal gray
nTPM: 80.9
Samples: 3

Max nTPM: 87.8
Min nTPM: 72.2
Sample B Female 82.7
Sample C Male 87.8
Sample D Male 72.2
Superior colliculi
nTPM: 79.6
Samples: 4

Max nTPM: 89.1
Min nTPM: 55.0
Sample A Female 88.5
Sample B Female 55.0
Sample C Male 85.9
Sample D Male 89.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 136.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 140.0
Min nTPM: 132.5
Sample A Male 132.5
Sample B Male 137.7
Sample C Female 140.0
Sample D Female 136.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
79749595 Antisense, RP_071204_02_D04, Mouse strain C57BL/6J (56 days, male) 9.0

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