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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC45A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC45A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
0.8
445
Tumor
0.8
533
Tumor
0.7
951
Tumor
0.7
537
Tumor
0.6
925
Tumor
0.6
137
Tumor
0.6
715
Tumor
0.6
727
Tumor
0.6
285
Tumor
0.6
267
Tumor
0.5
745
Tumor
0.5
965
Tumor
0.5
567
Tumor
0.5
313
Tumor
0.5
1025
Tumor
0.4
641
Tumor
0.4
535
Tumor
0.4
387
Tumor
0.4
483
Tumor
0.4
1013
Tumor
0.4
557
Tumor
0.4
685
Tumor
0.4
471
Tumor
0.4
283
Tumor
0.4
131
Tumor
0.4
1041
Tumor
0.4
957
Tumor
0.4
755
Tumor
0.4
487
Tumor
0.4
1027
Tumor
0.4
785
Tumor
0.4
851
Tumor
0.4
883
Tumor
0.4
327
Tumor
0.4
1021
Tumor
0.4
271
Tumor
0.3
473
Tumor
0.3
777
Tumor
0.3
477
Tumor
0.3
461
Tumor
0.3
975
Tumor
0.3
1031
Tumor
0.3
135
Tumor
0.3
923
Tumor
0.3
187
Tumor
0.3
663
Tumor
0.3
527
Tumor
0.3
737
Tumor
0.3
865
Tumor
0.3
553
Tumor
0.3
881
Tumor
0.3
911
Tumor
0.3
523
Tumor
0.3
171
Tumor
0.3
361
Tumor
0.3
331
Tumor
0.3
367
Tumor
0.3
221
Tumor
0.3
375
Tumor
0.3
953
Tumor
0.3
1015
Tumor
0.3
517
Tumor
0.2
113
Tumor
0.2
697
Tumor
0.2
815
Tumor
0.2
127
Tumor
0.2
981
Tumor
0.2
191
Tumor
0.2
277
Tumor
0.2
627
Tumor
0.2
955
Tumor
0.2
411
Tumor
0.2
231
Tumor
0.2
365
Tumor
0.2
443
Tumor
0.2
513
Tumor
0.2
357
Tumor
0.2
615
Tumor
0.2
413
Tumor
0.2
393
Tumor
0.2
147
Tumor
0.2
161
Tumor
0.1
213
Tumor
0.1
861
Tumor
0.1
451
Tumor
0.1
227
Tumor
0.1
977
Tumor
0.1
515
Tumor
0.1
915
Tumor
0.1
963
Tumor
0.1
427
Tumor
0.1
353
Tumor
0.1
211
Tumor
0.1
1043
Tumor
0.1
481
Tumor
0.1
223
Tumor
0.1
341
Tumor
0.1
913
Tumor
0.1
141
Tumor
0.1
261
Tumor
0.1
423
Tumor
0.1
983
Tumor
0.1
525
Tumor
0.1
743
Tumor
0.1
391
Tumor
0.1
937
Tumor
0.1
873
Tumor
0.1
967
Tumor
0.1
355
Tumor
0.1
524
Normal
0.1
447
Tumor
0.0
857
Tumor
0.0
617
Tumor
0.0
916
Normal
0.0
185
Tumor
0.0
195
Tumor
0.0
455
Tumor
0.0
817
Tumor
0.0
125
Tumor
0.0
661
Tumor
0.0
395
Tumor
0.0
192
Normal
0.0
573
Tumor
0.0
188
Normal
0.0
363
Tumor
0.0
212
Normal
0.0
415
Tumor
0.0
867
Tumor
0.0
741
Tumor
0.0
786
Normal
0.0
671
Tumor
0.0
921
Tumor
0.0
297
Tumor
0.0
493
Tumor
0.0
554
Normal
0.0
563
Tumor
0.0
724
Normal
0.0
217
Tumor
0.0
268
Normal
0.0
311
Tumor
0.0
665
Tumor
0.0
385
Tumor
0.0
647
Tumor
0.0
1045
Tumor
0.0
863
Tumor
0.0
383
Tumor
0.0
433
Tumor
0.0
474
Normal
0.0
286
Normal
0.0
284
Normal
0.0
145
Tumor
0.0
478
Normal
0.0
918
Normal
0.0
746
Normal
0.0
218
Normal
0.0
528
Normal
0.0
224
Normal
0.0
368
Normal
0.0
952
Normal
0.0
1014
Normal
0.0
536
Normal
-0.1
1042
Normal
-0.1
558
Normal
-0.1
978
Normal
-0.1
944
Normal
-0.1
852
Normal
-0.1
877
Tumor
-0.1
396
Normal
-0.1
823
Tumor
-0.1
386
Normal
-0.1
526
Normal
-0.1
545
Tumor
-0.1
138
Normal
-0.1
431
Tumor
-0.1
416
Normal
-0.1
917
Tumor
-0.1
956
Normal
-0.1
534
Normal
-0.1
136
Normal
-0.1
721
Tumor
-0.1
467
Tumor
-0.1
482
Normal
-0.1
635
Tumor
-0.1
954
Normal
-0.1
1026
Normal
-0.1
926
Normal
-0.1
491
Tumor
-0.1
492
Normal
-0.1
126
Normal
-0.1
1028
Normal
-0.1
444
Normal
-0.1
518
Normal
-0.1
312
Normal
-0.1
364
Normal
-0.1
722
Normal
-0.1
148
Normal
-0.1
362
Normal
-0.1
976
Normal
-0.1
778
Normal
-0.1
392
Normal
-0.1
982
Normal
-0.1
484
Normal
-0.1
538
Normal
-0.1
446
Normal
-0.1
356
Normal
-0.1
228
Normal
-0.1
571
Tumor
-0.1
384
Normal
-0.1
344
Normal
-0.1
728
Normal
-0.1
686
Normal
-0.1
278
Normal
-0.1
572
Normal
-0.1
435
Tumor
-0.1
142
Normal
-0.1
388
Normal
-0.1
465
Tumor
-0.1
394
Normal
-0.1
884
Normal
-0.1
672
Normal
-0.1
516
Normal
-0.1
922
Normal
-0.1
943
Tumor
-0.1
964
Normal
-0.1
434
Normal
-0.1
498
Normal
-0.1
214
Normal
-0.1
1022
Normal
-0.1
924
Normal
-0.1
984
Normal
-0.1
723
Tumor
-0.2
616
Normal
-0.2
421
Tumor
-0.2
714
Normal
-0.2
472
Normal
-0.2
262
Normal
-0.2
448
Normal
-0.2
328
Normal
-0.2
968
Normal
-0.2
868
Normal
-0.2
742
Normal
-0.2
462
Normal
-0.2
628
Normal
-0.2
814
Normal
-0.2
436
Normal
-0.2
514
Normal
-0.2
352
Normal
-0.2
128
Normal
-0.2
914
Normal
-0.2
232
Normal
-0.2
824
Normal
-0.2
874
Normal
-0.2
862
Normal
-0.2
488
Normal
-0.2
258
Normal
-0.2
172
Normal
-0.2
146
Normal
-0.2
272
Normal
-0.2
132
Normal
-0.2
866
Normal
-0.2
497
Tumor
-0.2
376
Normal
-0.2
222
Normal
-0.2
738
Normal
-0.2
642
Normal
-0.2
196
Normal
-0.2
426
Normal
-0.2
664
Normal
-0.2
716
Normal
-0.2
958
Normal
-0.2
466
Normal
-0.2
358
Normal
-0.2
412
Normal
-0.2
546
Normal
-0.2
564
Normal
-0.2
186
Normal
-0.2
464
Normal
-0.2
864
Normal
-0.2
756
Normal
-0.2
858
Normal
-0.2
912
Normal
-0.2
966
Normal
-0.2
568
Normal
-0.2
162
Normal
-0.2
424
Normal
-0.2
351
Tumor
-0.2
666
Normal
-0.2
425
Tumor
-0.2
114
Normal
-0.2
124
Normal
-0.2
662
Normal
-0.2
1016
Normal
-0.2
882
Normal
-0.2
1032
Normal
-0.2
314
Normal
-0.2
648
Normal
-0.2
1046
Normal
-0.2
456
Normal
-0.2
813
Tumor
-0.2
366
Normal
-0.2
463
Tumor
-0.2
818
Normal
-0.3
422
Normal
-0.3
574
Normal
-0.3
816
Normal
-0.3
938
Normal
-0.3
432
Normal
-0.3
494
Normal
-0.3
1044
Normal
-0.3
354
Normal
-0.3
414
Normal
-0.3
428
Normal
-0.3
696
Normal
-0.3
298
Normal
-0.3
744
Normal
-0.3
111
Normal
-0.3
468
Normal
-0.3
878
Normal
-0.3
452
Normal
-0.3
636
Normal
-0.3
618
Normal
-0.3
698
Normal
-0.3
332
Normal
-0.4
695
Tumor
-0.4
343
Tumor
-0.4
112
Tumor
-0.4
342
Normal
-0.4
123
Tumor
-0.6
713
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.