MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:20.2 nTPM
GTEx:10.3 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:14.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
2219 Male, age 76, both hemispheres 14.6
2019 Male, age 18, unknown 13.4
2411 Female, age 72, unknown 12.8
2828 Female, age 72, unknown 12.6
2586 Male, age 75, left hemisphere 11.8
1827 Male, age 72, unknown 11.7
2666 Male, age 74, left hemisphere 11.5
1833 Male, age 53, unknown 10.3
1870 Female, age 42, unknown 10.3
1830 Male, age 51, unknown 10.1
Dorsal raphe nucleus
nTPM: 13.2
2298 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 14.5
1828 Male, age 53, unknown 13.6
2750 Male, age 76, both hemispheres 11.9
2016 Female, age 72, unknown 10.7
Inferior colliculus
nTPM: 9.9
2097 Female, age 72, unknown 11.3
1890 Male, age 53, unknown 10.6
1848 Female, age 42, unknown 9.5
2849 Male, age 72, unknown 8.1
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 12.0
2502 Female, age 75, unknown 13.5
1795 Male, age 51, unknown 12.2
1947 Male, age 18, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 9.9
1831 Male, age 72, unknown 10.6
2464 Female, age 72, unknown 10.2
1840 Male, age 53, unknown 10.0
2850 Male, age 76, both hemispheres 8.8
Periaquaductal grey, lateral
nTPM: 9.6
2272 Male, age 74, both hemispheres 10.2
2140 Male, age 76, both hemispheres 9.4
2053 Male, age 18, unknown 9.1
Pretectal area
nTPM: 12.4
2007 Male, age 72, unknown 15.1
1944 Female, age 72, unknown 15.0
1816 Male, age 51, unknown 14.9
1817 Female, age 42, unknown 13.6
2667 Female, age 75, unknown 13.2
1815 Male, age 53, unknown 13.1
2273 Male, age 74, both hemispheres 10.9
2224 Female, age 72, unknown 10.7
2407 Male, age 75, both hemispheres 10.4
2316 Male, age 76, right hemisphere 10.0
2825 Male, age 18, unknown 9.5
Red nucleus
nTPM: 12.2
2588 Male, age 74, left hemisphere 13.8
2725 Female, age 75, unknown 13.4
1821 Female, age 72, unknown 13.2
2503 Female, age 72, unknown 12.9
2785 Male, age 18, unknown 12.5
1904 Male, age 53, unknown 12.3
2769 Male, age 72, unknown 12.3
1954 Female, age 42, unknown 12.2
2227 Male, age 72, unknown 11.7
1865 Male, age 51, unknown 11.2
2584 Male, age 75, left hemisphere 10.5
2823 Male, age 76, right hemisphere 10.3
Substantia nigra
nTPM: 20.2
1916 Female, age 42, unknown 41.0
1851 Male, age 51, unknown 25.5
2699 Male, age 18, unknown 23.8
1941 Male, age 53, unknown 21.3
2241 Male, age 72, unknown 17.5
2665 Male, age 74, both hemispheres 17.3
2409 Female, age 72, unknown 16.5
1889 Female, age 72, unknown 15.2
2590 Female, age 75, unknown 12.2
2583 Male, age 75, right hemisphere 11.2
Superior colliculus
nTPM: 11.2
2087 Female, age 72, unknown 14.9
2668 Female, age 75, unknown 12.9
1796 Male, age 53, unknown 12.2
2261 Male, age 18, unknown 11.7
2587 Male, age 74, left hemisphere 10.9
2664 Male, age 75, both hemispheres 10.6
1995 Male, age 72, unknown 10.3
1839 Male, age 51, unknown 10.0
1913 Female, age 42, unknown 9.4
1895 Male, age 76, right hemisphere 9.0
Ventral tegmental area
nTPM: 15.5
2410 Female, age 72, unknown 21.1
1915 Female, age 42, unknown 20.9
2218 Male, age 76, both hemispheres 16.8
1942 Male, age 51, unknown 12.2
2021 Male, age 53, unknown 11.1
2223 Female, age 72, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 27.1
Min nTPM: 4.2
Std nTPM: 4.1
Median nTPM: 9.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 20.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 19.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 18.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 17.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 17.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 15.5
Sample A Female 20.5
Sample B Female 15.9
Sample C Male 19.1
Sample D Male 15.5
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 23.9
Min nTPM: 13.6
Sample A Female 23.9
Sample B Female 13.8
Sample C Male 18.0
Sample D Male 13.6
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 14.1
Min nTPM: 11.2
Sample B Female 12.2
Sample C Male 14.1
Sample D Male 11.2
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.4
Sample A Female 15.6
Sample B Female 16.9
Sample C Male 14.7
Sample D Male 14.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.1
Sample A Male 18.5
Sample B Male 14.2
Sample C Female 12.1
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
513498 Antisense, RP_040810_02_A08, Mouse strain C57BL/6J (56 days, male) 0.6
70919627 Antisense, RP_050713_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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