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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABHD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
132.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
126.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
122.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
120.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
119.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
102.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
95.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
93.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
91.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
89.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
89.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
81.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
80.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
80.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
78.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
78.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
75.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
74.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
73.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
72.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
72.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
67.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
67.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
63.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
60.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
60.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
56.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
56.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
55.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
54.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
53.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
51.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
49.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
44.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
43.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
29.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABHD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.1
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
160.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
98.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
91.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
86.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
85.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
82.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
76.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
76.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
75.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
70.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
69.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
68.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
66.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
60.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
55.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
54.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
54.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
53.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
53.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
53.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
51.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
50.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
47.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
955
Tumor
1.5
968
Normal
1.1
636
Normal
0.9
481
Tumor
0.9
914
Normal
0.9
628
Normal
0.9
685
Tumor
0.8
278
Normal
0.8
956
Normal
0.8
114
Normal
0.8
958
Normal
0.7
778
Normal
0.7
411
Tumor
0.7
922
Normal
0.7
627
Tumor
0.7
422
Normal
0.7
462
Normal
0.7
268
Normal
0.7
412
Normal
0.7
314
Normal
0.7
777
Tumor
0.7
356
Normal
0.6
286
Normal
0.6
474
Normal
0.6
218
Normal
0.6
423
Tumor
0.6
716
Normal
0.6
526
Normal
0.6
913
Tumor
0.6
558
Normal
0.6
284
Normal
0.6
128
Normal
0.6
1028
Normal
0.6
868
Normal
0.6
964
Normal
0.6
564
Normal
0.6
966
Normal
0.6
518
Normal
0.6
172
Normal
0.6
514
Normal
0.5
461
Tumor
0.5
416
Normal
0.5
524
Normal
0.5
494
Normal
0.5
534
Normal
0.5
728
Normal
0.5
554
Normal
0.5
222
Normal
0.5
952
Normal
0.5
426
Normal
0.5
262
Normal
0.5
786
Normal
0.5
332
Normal
0.5
572
Normal
0.5
214
Normal
0.5
212
Normal
0.5
258
Normal
0.5
852
Normal
0.5
857
Tumor
0.5
464
Normal
0.5
816
Normal
0.5
448
Normal
0.5
341
Tumor
0.5
162
Normal
0.5
138
Normal
0.5
981
Tumor
0.5
756
Normal
0.4
1014
Normal
0.4
452
Normal
0.4
982
Normal
0.4
618
Normal
0.4
978
Normal
0.4
915
Tumor
0.4
428
Normal
0.4
365
Tumor
0.4
698
Normal
0.4
482
Normal
0.4
746
Normal
0.4
368
Normal
0.4
488
Normal
0.4
124
Normal
0.4
342
Normal
0.4
261
Tumor
0.4
615
Tumor
0.4
874
Normal
0.4
424
Normal
0.4
714
Normal
0.4
328
Normal
0.4
137
Tumor
0.4
616
Normal
0.4
492
Normal
0.4
738
Normal
0.3
918
Normal
0.3
864
Normal
0.3
126
Normal
0.3
396
Normal
0.3
722
Normal
0.3
924
Normal
0.3
686
Normal
0.3
358
Normal
0.3
884
Normal
0.3
111
Normal
0.3
878
Normal
0.3
648
Normal
0.3
312
Normal
0.3
976
Normal
0.3
1016
Normal
0.3
862
Normal
0.3
866
Normal
0.3
362
Normal
0.3
434
Normal
0.3
858
Normal
0.3
926
Normal
0.3
984
Normal
0.3
433
Tumor
0.3
696
Normal
0.3
785
Tumor
0.3
515
Tumor
0.3
662
Normal
0.3
414
Normal
0.3
436
Normal
0.2
388
Normal
0.2
224
Normal
0.2
642
Normal
0.2
232
Normal
0.2
344
Normal
0.2
186
Normal
0.2
528
Normal
0.2
298
Normal
0.2
568
Normal
0.2
148
Normal
0.2
196
Normal
0.2
1044
Normal
0.2
472
Normal
0.2
513
Tumor
0.2
272
Normal
0.2
142
Normal
0.2
354
Normal
0.2
228
Normal
0.2
912
Normal
0.2
1015
Tumor
0.2
938
Normal
0.2
574
Normal
0.2
723
Tumor
0.2
188
Normal
0.2
432
Normal
0.1
127
Tumor
0.1
477
Tumor
0.1
516
Normal
0.1
446
Normal
0.1
484
Normal
0.1
415
Tumor
0.1
916
Normal
0.1
818
Normal
0.1
1032
Normal
0.1
867
Tumor
0.1
1027
Tumor
0.1
364
Normal
0.1
466
Normal
0.1
1046
Normal
0.1
136
Normal
0.1
468
Normal
0.1
1042
Normal
0.0
882
Normal
0.0
742
Normal
0.0
352
Normal
0.0
755
Tumor
0.0
664
Normal
0.0
953
Tumor
0.0
217
Tumor
0.0
1026
Normal
0.0
456
Normal
0.0
873
Tumor
0.0
536
Normal
0.0
563
Tumor
0.0
394
Normal
0.0
824
Normal
0.0
141
Tumor
0.0
546
Normal
0.0
954
Normal
-0.1
392
Normal
-0.1
1041
Tumor
-0.1
1022
Normal
-0.1
132
Normal
-0.1
883
Tumor
-0.1
393
Tumor
-0.1
617
Tumor
-0.1
944
Normal
-0.1
353
Tumor
-0.1
498
Normal
-0.1
1045
Tumor
-0.1
665
Tumor
-0.1
421
Tumor
-0.1
267
Tumor
-0.1
327
Tumor
-0.2
925
Tumor
-0.2
666
Normal
-0.2
447
Tumor
-0.2
444
Normal
-0.2
187
Tumor
-0.2
465
Tumor
-0.2
478
Normal
-0.2
384
Normal
-0.2
672
Normal
-0.2
963
Tumor
-0.2
851
Tumor
-0.2
911
Tumor
-0.2
721
Tumor
-0.2
223
Tumor
-0.3
493
Tumor
-0.3
366
Normal
-0.3
171
Tumor
-0.3
557
Tumor
-0.4
376
Normal
-0.4
146
Normal
-0.4
823
Tumor
-0.4
386
Normal
-0.4
195
Tumor
-0.4
383
Tumor
-0.4
745
Tumor
-0.4
491
Tumor
-0.4
861
Tumor
-0.4
943
Tumor
-0.4
451
Tumor
-0.5
145
Tumor
-0.5
483
Tumor
-0.5
538
Normal
-0.5
744
Normal
-0.5
387
Tumor
-0.5
533
Tumor
-0.5
231
Tumor
-0.5
357
Tumor
-0.5
1043
Tumor
-0.5
135
Tumor
-0.5
192
Normal
-0.6
185
Tumor
-0.6
814
Normal
-0.6
815
Tumor
-0.6
431
Tumor
-0.6
977
Tumor
-0.6
191
Tumor
-0.6
313
Tumor
-0.6
741
Tumor
-0.6
715
Tumor
-0.6
427
Tumor
-0.6
361
Tumor
-0.7
663
Tumor
-0.7
567
Tumor
-0.7
445
Tumor
-0.7
571
Tumor
-0.7
113
Tumor
-0.7
161
Tumor
-0.7
112
Tumor
-0.7
713
Tumor
-0.7
435
Tumor
-0.7
937
Tumor
-0.7
695
Tumor
-0.7
647
Tumor
-0.7
443
Tumor
-0.8
641
Tumor
-0.8
467
Tumor
-0.8
983
Tumor
-0.8
975
Tumor
-0.8
355
Tumor
-0.8
917
Tumor
-0.8
525
Tumor
-0.8
297
Tumor
-0.8
343
Tumor
-0.8
257
Tumor
-0.8
395
Tumor
-0.8
957
Tumor
-0.8
487
Tumor
-0.8
455
Tumor
-0.8
391
Tumor
-0.9
227
Tumor
-0.9
965
Tumor
-0.9
737
Tumor
-0.9
413
Tumor
-0.9
635
Tumor
-0.9
367
Tumor
-0.9
535
Tumor
-0.9
537
Tumor
-0.9
517
Tumor
-1.0
881
Tumor
-1.0
813
Tumor
-1.0
863
Tumor
-1.0
497
Tumor
-1.0
283
Tumor
-1.0
213
Tumor
-1.0
553
Tumor
-1.0
375
Tumor
-1.0
817
Tumor
-1.0
147
Tumor
-1.0
363
Tumor
-1.0
425
Tumor
-1.0
527
Tumor
-1.0
271
Tumor
-1.1
221
Tumor
-1.1
967
Tumor
-1.1
311
Tumor
-1.1
277
Tumor
-1.2
351
Tumor
-1.2
1013
Tumor
-1.2
697
Tumor
-1.2
523
Tumor
-1.2
473
Tumor
-1.3
877
Tumor
-1.3
331
Tumor
-1.3
727
Tumor
-1.3
951
Tumor
-1.3
385
Tumor
-1.3
923
Tumor
-1.4
211
Tumor
-1.4
573
Tumor
-1.4
724
Normal
-1.4
671
Tumor
-1.4
1025
Tumor
-1.4
123
Tumor
-1.4
285
Tumor
-1.4
463
Tumor
-1.5
1021
Tumor
-1.5
471
Tumor
-1.5
125
Tumor
-1.6
865
Tumor
-1.6
921
Tumor
-1.6
545
Tumor
-1.7
1031
Tumor
-1.7
131
Tumor
-1.7
661
Tumor
-1.8
743
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
