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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCSK6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
300.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
287.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
241.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
239.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
217.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
198.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
192.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
181.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
178.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
173.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
172.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
166.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
159.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
158.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
154.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
154.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
152.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
146.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
145.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
143.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
142.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
141.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
140.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
137.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
137.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
136.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
134.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
133.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
130.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
130.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
129.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
126.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
125.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
124.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
124.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
124.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
121.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
119.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
118.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
117.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
113.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
112.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
112.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
111.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
110.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
105.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
103.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
102.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
100.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
100.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
99.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
99.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
97.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
97.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
94.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
93.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
92.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
92.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
91.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
91.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
88.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
87.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
87.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
87.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
87.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
86.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
86.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
84.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
84.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
83.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
81.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
81.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
80.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
80.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
80.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
80.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
80.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
79.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
78.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
77.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
77.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
76.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
75.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
75.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
74.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
74.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
73.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
72.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
72.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
72.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
71.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
71.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
71.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
71.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
70.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
70.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
68.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
68.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
65.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
65.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
64.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
64.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
62.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
62.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
62.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
62.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
62.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
61.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
61.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
61.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
60.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
60.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
59.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
58.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
58.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
58.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
57.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
57.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
56.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
55.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
54.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
53.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
52.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
51.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
51.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
50.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
48.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
46.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
44.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
43.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCSK6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.1
Number of samples
231
Samples
Sample
Description
TPM
DO45096
0 years, male, NA, stage:2, dead, 1290 days
286.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
180.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
152.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
134.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
127.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
126.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
115.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
115.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
114.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
113.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
106.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
103.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
98.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
96.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
95.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
95.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
95.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
95.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
93.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
92.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
92.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
89.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
86.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
84.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
83.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
82.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
82.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
80.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
80.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
79.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
79.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
78.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
77.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
76.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
76.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
76.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
74.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
70.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
69.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
67.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
66.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
66.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
65.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
64.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
63.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
63.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
62.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
59.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
59.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
58.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
56.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
56.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
51.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
50.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
50.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
48.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
47.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
41.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.8
777
Tumor
1.4
257
Tumor
1.4
785
Tumor
1.2
1027
Tumor
1.0
523
Tumor
1.0
357
Tumor
0.9
615
Tumor
0.9
745
Tumor
0.9
223
Tumor
0.8
393
Tumor
0.8
137
Tumor
0.8
285
Tumor
0.8
227
Tumor
0.7
527
Tumor
0.7
813
Tumor
0.6
423
Tumor
0.6
487
Tumor
0.6
627
Tumor
0.6
481
Tumor
0.5
425
Tumor
0.5
445
Tumor
0.5
195
Tumor
0.5
286
Normal
0.5
728
Normal
0.5
392
Normal
0.5
981
Tumor
0.5
868
Normal
0.5
714
Normal
0.4
564
Normal
0.4
518
Normal
0.4
212
Normal
0.4
956
Normal
0.4
462
Normal
0.4
136
Normal
0.4
228
Normal
0.4
187
Tumor
0.4
642
Normal
0.4
968
Normal
0.4
261
Tumor
0.4
616
Normal
0.4
922
Normal
0.4
953
Tumor
0.4
738
Normal
0.4
468
Normal
0.4
635
Tumor
0.3
628
Normal
0.3
756
Normal
0.3
727
Tumor
0.3
142
Normal
0.3
114
Normal
0.3
918
Normal
0.3
636
Normal
0.3
111
Normal
0.3
365
Tumor
0.3
461
Tumor
0.3
218
Normal
0.3
258
Normal
0.3
452
Normal
0.3
214
Normal
0.3
526
Normal
0.3
618
Normal
0.3
135
Tumor
0.3
617
Tumor
0.3
431
Tumor
0.3
138
Normal
0.3
368
Normal
0.3
955
Tumor
0.3
232
Normal
0.3
874
Normal
0.3
866
Normal
0.3
696
Normal
0.3
926
Normal
0.3
864
Normal
0.3
778
Normal
0.3
494
Normal
0.3
746
Normal
0.3
358
Normal
0.3
188
Normal
0.3
113
Tumor
0.3
723
Tumor
0.3
222
Normal
0.3
284
Normal
0.3
924
Normal
0.3
514
Normal
0.2
312
Normal
0.2
558
Normal
0.2
557
Tumor
0.2
916
Normal
0.2
455
Tumor
0.2
361
Tumor
0.2
716
Normal
0.2
554
Normal
0.2
572
Normal
0.2
436
Normal
0.2
1022
Normal
0.2
466
Normal
0.2
722
Normal
0.2
388
Normal
0.2
944
Normal
0.2
786
Normal
0.2
394
Normal
0.2
982
Normal
0.2
426
Normal
0.2
884
Normal
0.2
524
Normal
0.2
132
Normal
0.2
877
Tumor
0.2
721
Tumor
0.2
172
Normal
0.2
1045
Tumor
0.2
448
Normal
0.2
328
Normal
0.2
464
Normal
0.1
1026
Normal
0.1
852
Normal
0.1
353
Tumor
0.1
414
Normal
0.1
1042
Normal
0.1
386
Normal
0.1
858
Normal
0.1
862
Normal
0.1
471
Tumor
0.1
424
Normal
0.1
482
Normal
0.1
422
Normal
0.1
412
Normal
0.1
857
Tumor
0.1
966
Normal
0.1
1016
Normal
0.1
978
Normal
0.1
472
Normal
0.1
396
Normal
0.1
128
Normal
0.1
262
Normal
0.1
432
Normal
0.1
818
Normal
0.1
484
Normal
0.1
964
Normal
0.1
952
Normal
0.1
467
Tumor
0.1
912
Normal
0.1
364
Normal
0.1
568
Normal
0.1
1044
Normal
0.1
528
Normal
0.1
433
Tumor
0.1
648
Normal
0.1
415
Tumor
0.1
954
Normal
0.1
742
Normal
0.1
196
Normal
0.1
356
Normal
0.1
126
Normal
0.1
574
Normal
0.1
498
Normal
0.0
873
Tumor
0.0
387
Tumor
0.0
698
Normal
0.0
314
Normal
0.0
686
Normal
0.0
272
Normal
0.0
278
Normal
0.0
1014
Normal
0.0
662
Normal
0.0
563
Tumor
0.0
938
Normal
0.0
277
Tumor
0.0
671
Tumor
0.0
1028
Normal
0.0
824
Normal
0.0
497
Tumor
0.0
327
Tumor
0.0
958
Normal
0.0
148
Normal
0.0
363
Tumor
0.0
1032
Normal
0.0
816
Normal
0.0
146
Normal
0.0
434
Normal
0.0
444
Normal
0.0
332
Normal
0.0
573
Tumor
0.0
162
Normal
0.0
217
Tumor
0.0
567
Tumor
0.0
456
Normal
0.0
474
Normal
0.0
362
Normal
0.0
342
Normal
0.0
492
Normal
0.0
141
Tumor
0.0
983
Tumor
0.0
416
Normal
0.0
976
Normal
0.0
713
Tumor
0.0
488
Normal
0.0
224
Normal
0.0
344
Normal
0.0
428
Normal
0.0
517
Tumor
0.0
737
Tumor
-0.1
271
Tumor
-0.1
145
Tumor
-0.1
515
Tumor
-0.1
313
Tumor
-0.1
664
Normal
-0.1
1046
Normal
-0.1
376
Normal
-0.1
914
Normal
-0.1
477
Tumor
-0.1
352
Normal
-0.1
937
Tumor
-0.1
186
Normal
-0.1
443
Tumor
-0.1
882
Normal
-0.1
124
Normal
-0.1
963
Tumor
-0.1
984
Normal
-0.1
571
Tumor
-0.1
823
Tumor
-0.1
672
Normal
-0.1
647
Tumor
-0.1
268
Normal
-0.1
298
Normal
-0.1
354
Normal
-0.2
814
Normal
-0.2
538
Normal
-0.2
331
Tumor
-0.2
641
Tumor
-0.2
366
Normal
-0.2
878
Normal
-0.2
171
Tumor
-0.2
463
Tumor
-0.2
546
Normal
-0.2
553
Tumor
-0.2
715
Tumor
-0.2
478
Normal
-0.2
867
Tumor
-0.2
975
Tumor
-0.2
213
Tumor
-0.2
161
Tumor
-0.2
534
Normal
-0.2
516
Normal
-0.3
666
Normal
-0.3
1025
Tumor
-0.3
446
Normal
-0.3
1043
Tumor
-0.3
191
Tumor
-0.3
343
Tumor
-0.3
375
Tumor
-0.3
915
Tumor
-0.3
421
Tumor
-0.3
483
Tumor
-0.3
192
Normal
-0.3
861
Tumor
-0.3
267
Tumor
-0.3
384
Normal
-0.3
923
Tumor
-0.3
465
Tumor
-0.3
297
Tumor
-0.3
755
Tumor
-0.4
447
Tumor
-0.4
493
Tumor
-0.4
1021
Tumor
-0.4
112
Tumor
-0.4
1013
Tumor
-0.4
815
Tumor
-0.4
185
Tumor
-0.4
131
Tumor
-0.4
221
Tumor
-0.4
367
Tumor
-0.4
881
Tumor
-0.4
413
Tumor
-0.4
147
Tumor
-0.5
513
Tumor
-0.5
1041
Tumor
-0.5
536
Normal
-0.5
851
Tumor
-0.5
951
Tumor
-0.5
451
Tumor
-0.5
533
Tumor
-0.5
341
Tumor
-0.5
411
Tumor
-0.5
697
Tumor
-0.5
391
Tumor
-0.5
491
Tumor
-0.5
125
Tumor
-0.5
1031
Tumor
-0.5
395
Tumor
-0.6
883
Tumor
-0.6
685
Tumor
-0.6
383
Tumor
-0.6
695
Tumor
-0.6
545
Tumor
-0.6
865
Tumor
-0.6
385
Tumor
-0.6
913
Tumor
-0.6
427
Tumor
-0.6
977
Tumor
-0.6
967
Tumor
-0.6
351
Tumor
-0.6
921
Tumor
-0.7
925
Tumor
-0.7
663
Tumor
-0.7
355
Tumor
-0.7
473
Tumor
-0.7
744
Normal
-0.7
231
Tumor
-0.7
127
Tumor
-0.7
741
Tumor
-0.8
1015
Tumor
-0.8
817
Tumor
-0.8
665
Tumor
-0.9
943
Tumor
-0.9
957
Tumor
-0.9
435
Tumor
-0.9
283
Tumor
-0.9
525
Tumor
-1.0
535
Tumor
-1.0
661
Tumor
-1.0
911
Tumor
-1.0
123
Tumor
-1.0
917
Tumor
-1.0
724
Normal
-1.0
311
Tumor
-1.0
743
Tumor
-1.1
965
Tumor
-1.1
211
Tumor
-1.1
537
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.