We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ULK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ULK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
138.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
93.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
93.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
81.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
71.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
64.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
56.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
50.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
49.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
785
Tumor
1.0
387
Tumor
0.9
128
Normal
0.8
413
Tumor
0.7
361
Tumor
0.7
445
Tumor
0.7
455
Tumor
0.7
851
Tumor
0.7
697
Tumor
0.7
957
Tumor
0.7
723
Tumor
0.6
881
Tumor
0.6
221
Tumor
0.6
365
Tumor
0.6
1027
Tumor
0.6
285
Tumor
0.6
951
Tumor
0.6
493
Tumor
0.6
533
Tumor
0.6
925
Tumor
0.6
937
Tumor
0.6
523
Tumor
0.6
1042
Normal
0.6
536
Normal
0.6
737
Tumor
0.5
738
Normal
0.5
527
Tumor
0.5
213
Tumor
0.5
721
Tumor
0.5
535
Tumor
0.5
1021
Tumor
0.5
553
Tumor
0.5
427
Tumor
0.5
195
Tumor
0.5
433
Tumor
0.5
187
Tumor
0.5
563
Tumor
0.5
111
Normal
0.5
722
Normal
0.5
414
Normal
0.5
921
Tumor
0.5
135
Tumor
0.5
188
Normal
0.5
467
Tumor
0.4
745
Tumor
0.4
393
Tumor
0.4
375
Tumor
0.4
383
Tumor
0.4
126
Normal
0.4
695
Tumor
0.4
367
Tumor
0.4
1031
Tumor
0.4
446
Normal
0.4
525
Tumor
0.4
357
Tumor
0.4
524
Normal
0.4
884
Normal
0.4
635
Tumor
0.4
368
Normal
0.4
953
Tumor
0.4
926
Normal
0.4
975
Tumor
0.4
537
Tumor
0.4
161
Tumor
0.4
434
Normal
0.4
191
Tumor
0.4
482
Normal
0.4
125
Tumor
0.4
463
Tumor
0.4
353
Tumor
0.4
162
Normal
0.4
488
Normal
0.3
981
Tumor
0.3
443
Tumor
0.3
815
Tumor
0.3
557
Tumor
0.3
471
Tumor
0.3
228
Normal
0.3
366
Normal
0.3
425
Tumor
0.3
395
Tumor
0.3
343
Tumor
0.3
666
Normal
0.3
955
Tumor
0.3
376
Normal
0.3
487
Tumor
0.3
146
Normal
0.3
573
Tumor
0.3
883
Tumor
0.3
223
Tumor
0.3
574
Normal
0.3
617
Tumor
0.3
132
Normal
0.3
661
Tumor
0.3
212
Normal
0.3
185
Tumor
0.3
124
Normal
0.3
113
Tumor
0.3
311
Tumor
0.3
362
Normal
0.3
858
Normal
0.3
923
Tumor
0.3
1045
Tumor
0.3
728
Normal
0.3
882
Normal
0.3
466
Normal
0.3
857
Tumor
0.3
444
Normal
0.2
1043
Tumor
0.2
262
Normal
0.2
517
Tumor
0.2
148
Normal
0.2
924
Normal
0.2
267
Tumor
0.2
641
Tumor
0.2
867
Tumor
0.2
391
Tumor
0.2
137
Tumor
0.2
384
Normal
0.2
865
Tumor
0.2
331
Tumor
0.2
461
Tumor
0.2
327
Tumor
0.2
958
Normal
0.2
494
Normal
0.2
426
Normal
0.2
647
Tumor
0.2
814
Normal
0.2
131
Tumor
0.2
628
Normal
0.2
862
Normal
0.1
423
Tumor
0.1
114
Normal
0.1
354
Normal
0.1
462
Normal
0.1
861
Tumor
0.1
456
Normal
0.1
358
Normal
0.1
968
Normal
0.1
864
Normal
0.1
863
Tumor
0.1
138
Normal
0.1
192
Normal
0.1
1041
Tumor
0.1
558
Normal
0.1
448
Normal
0.1
428
Normal
0.1
545
Tumor
0.1
568
Normal
0.1
341
Tumor
0.1
481
Tumor
0.1
232
Normal
0.1
468
Normal
0.1
648
Normal
0.1
567
Tumor
0.1
716
Normal
0.1
818
Normal
0.1
136
Normal
0.1
283
Tumor
0.1
447
Tumor
0.1
642
Normal
0.1
231
Tumor
0.1
258
Normal
0.1
755
Tumor
0.1
696
Normal
0.1
956
Normal
0.1
432
Normal
0.1
436
Normal
0.1
913
Tumor
0.1
145
Tumor
0.1
227
Tumor
0.1
938
Normal
0.1
564
Normal
0.1
685
Tumor
0.1
686
Normal
0.1
261
Tumor
0.1
698
Normal
0.1
777
Tumor
0.1
778
Normal
0.1
352
Normal
0.1
665
Tumor
0.1
411
Tumor
0.1
813
Tumor
0.1
483
Tumor
0.1
526
Normal
0.1
1022
Normal
0.0
713
Tumor
0.0
424
Normal
0.0
196
Normal
0.0
415
Tumor
0.0
286
Normal
0.0
186
Normal
0.0
912
Normal
0.0
1015
Tumor
0.0
1028
Normal
0.0
431
Tumor
0.0
416
Normal
0.0
451
Tumor
0.0
385
Tumor
0.0
952
Normal
0.0
976
Normal
0.0
742
Normal
0.0
1032
Normal
0.0
297
Tumor
0.0
394
Normal
0.0
214
Normal
0.0
498
Normal
0.0
873
Tumor
0.0
172
Normal
0.0
922
Normal
0.0
224
Normal
0.0
344
Normal
0.0
786
Normal
0.0
388
Normal
0.0
918
Normal
0.0
257
Tumor
0.0
328
Normal
0.0
866
Normal
0.0
277
Tumor
0.0
1044
Normal
0.0
355
Tumor
0.0
211
Tumor
0.0
1025
Tumor
0.0
817
Tumor
0.0
464
Normal
0.0
141
Tumor
0.0
1046
Normal
0.0
724
Normal
0.0
916
Normal
0.0
538
Normal
0.0
917
Tumor
0.0
911
Tumor
0.0
636
Normal
0.0
342
Normal
0.0
412
Normal
0.0
386
Normal
0.0
518
Normal
0.0
142
Normal
-0.1
978
Normal
-0.1
534
Normal
-0.1
823
Tumor
-0.1
954
Normal
-0.1
477
Tumor
-0.1
744
Normal
-0.1
1026
Normal
-0.1
528
Normal
-0.1
967
Tumor
-0.1
868
Normal
-0.1
268
Normal
-0.1
877
Tumor
-0.1
715
Tumor
-0.1
473
Tumor
-0.1
147
Tumor
-0.1
217
Tumor
-0.1
627
Tumor
-0.1
222
Normal
-0.1
964
Normal
-0.1
672
Normal
-0.1
741
Tumor
-0.1
874
Normal
-0.1
554
Normal
-0.1
816
Normal
-0.1
396
Normal
-0.1
663
Tumor
-0.1
435
Tumor
-0.1
572
Normal
-0.1
662
Normal
-0.1
671
Tumor
-0.2
714
Normal
-0.2
756
Normal
-0.2
944
Normal
-0.2
478
Normal
-0.2
618
Normal
-0.2
852
Normal
-0.2
664
Normal
-0.2
824
Normal
-0.2
984
Normal
-0.2
284
Normal
-0.2
465
Tumor
-0.2
966
Normal
-0.2
472
Normal
-0.2
313
Tumor
-0.2
127
Tumor
-0.2
515
Tumor
-0.2
298
Normal
-0.2
516
Normal
-0.2
546
Normal
-0.2
914
Normal
-0.2
271
Tumor
-0.2
421
Tumor
-0.2
312
Normal
-0.2
1016
Normal
-0.2
513
Tumor
-0.2
878
Normal
-0.3
514
Normal
-0.3
364
Normal
-0.3
571
Tumor
-0.3
314
Normal
-0.3
743
Tumor
-0.3
484
Normal
-0.3
363
Tumor
-0.3
727
Tumor
-0.3
278
Normal
-0.3
218
Normal
-0.3
392
Normal
-0.3
963
Tumor
-0.3
422
Normal
-0.3
332
Normal
-0.3
915
Tumor
-0.4
746
Normal
-0.4
452
Normal
-0.4
356
Normal
-0.4
112
Tumor
-0.4
615
Tumor
-0.4
492
Normal
-0.4
616
Normal
-0.4
272
Normal
-0.4
983
Tumor
-0.4
351
Tumor
-0.4
474
Normal
-0.4
965
Tumor
-0.4
943
Tumor
-0.4
982
Normal
-0.4
1014
Normal
-0.4
497
Tumor
-0.5
123
Tumor
-0.5
491
Tumor
-0.6
977
Tumor
-0.6
171
Tumor
-0.7
1013
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
