MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA Brain:17.5 nTPM
GTEx:4.5 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:3.9 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2586 Male, age 75, left hemisphere 25.6
2019 Male, age 18, unknown 23.9
2219 Male, age 76, both hemispheres 21.4
2828 Female, age 72, unknown 17.1
2666 Male, age 74, left hemisphere 16.0
1827 Male, age 72, unknown 15.3
1830 Male, age 51, unknown 14.7
2411 Female, age 72, unknown 14.5
1870 Female, age 42, unknown 13.7
1833 Male, age 53, unknown 12.8
Dorsal raphe nucleus
nTPM: 12.7
2750 Male, age 76, both hemispheres 16.4
2298 Female, age 72, unknown 12.7
2047 Male, age 72, unknown 11.9
1828 Male, age 53, unknown 11.7
2016 Female, age 72, unknown 10.7
Inferior colliculus
nTPM: 13.3
2097 Female, age 72, unknown 15.0
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 12.7
2849 Male, age 72, unknown 11.4
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Periaquaductal grey, anterior
nTPM: 15.8
2502 Female, age 75, unknown 19.9
1795 Male, age 51, unknown 15.2
1947 Male, age 18, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 10.8
2464 Female, age 72, unknown 12.0
1831 Male, age 72, unknown 11.5
1840 Male, age 53, unknown 10.4
2850 Male, age 76, both hemispheres 9.1
Periaquaductal grey, lateral
nTPM: 10.6
2140 Male, age 76, both hemispheres 11.1
2053 Male, age 18, unknown 10.8
2272 Male, age 74, both hemispheres 10.0
Pretectal area
nTPM: 16.6
2007 Male, age 72, unknown 29.6
1817 Female, age 42, unknown 25.1
1815 Male, age 53, unknown 21.6
1816 Male, age 51, unknown 17.8
1944 Female, age 72, unknown 17.0
2407 Male, age 75, both hemispheres 15.8
2316 Male, age 76, right hemisphere 13.0
2224 Female, age 72, unknown 12.2
2825 Male, age 18, unknown 11.4
2667 Female, age 75, unknown 10.2
2273 Male, age 74, both hemispheres 9.3
Red nucleus
nTPM: 17.1
2785 Male, age 18, unknown 26.5
2584 Male, age 75, left hemisphere 25.7
2588 Male, age 74, left hemisphere 18.6
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.1
2503 Female, age 72, unknown 16.0
1904 Male, age 53, unknown 15.5
1865 Male, age 51, unknown 15.3
1954 Female, age 42, unknown 14.5
1821 Female, age 72, unknown 14.0
2823 Male, age 76, right hemisphere 13.6
2725 Female, age 75, unknown 12.6
Substantia nigra
nTPM: 13.3
2583 Male, age 75, right hemisphere 20.5
1889 Female, age 72, unknown 18.0
2665 Male, age 74, both hemispheres 14.2
2590 Female, age 75, unknown 13.9
1941 Male, age 53, unknown 13.3
1851 Male, age 51, unknown 13.1
1916 Female, age 42, unknown 12.2
2241 Male, age 72, unknown 9.7
2699 Male, age 18, unknown 9.3
2409 Female, age 72, unknown 9.1
Superior colliculus
nTPM: 14.8
2668 Female, age 75, unknown 21.0
2664 Male, age 75, both hemispheres 19.6
1796 Male, age 53, unknown 16.1
2261 Male, age 18, unknown 15.2
1839 Male, age 51, unknown 13.9
1995 Male, age 72, unknown 13.4
2087 Female, age 72, unknown 13.1
1913 Female, age 42, unknown 12.9
2587 Male, age 74, left hemisphere 12.3
1895 Male, age 76, right hemisphere 11.0
Ventral tegmental area
nTPM: 14.0
1942 Male, age 51, unknown 16.2
2223 Female, age 72, unknown 15.6
2218 Male, age 76, both hemispheres 14.5
2021 Male, age 53, unknown 13.0
2410 Female, age 72, unknown 12.8
1915 Female, age 42, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.5
Samples: 139

Max nTPM: 10.8
Min nTPM: 2.2
Std nTPM: 1.3
Median nTPM: 4.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 10.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 10.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 7.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 7.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 7.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 6.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 6.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 6.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 6.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 6.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 7.3
Min nTPM: 3.8
Sample A Female 7.3
Sample B Female 6.0
Sample C Male 5.8
Sample D Male 3.8
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 12.2
Min nTPM: 4.4
Sample A Female 6.8
Sample B Female 4.4
Sample C Male 12.2
Sample D Male 5.8
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.0
Sample B Female 4.2
Sample C Male 5.4
Sample D Male 4.0
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 6.8
Min nTPM: 6.5
Sample A Female 6.7
Sample B Female 6.8
Sample C Male 6.5
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.5
Sample A Male 4.3
Sample B Male 4.2
Sample C Female 3.7
Sample D Female 3.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
576423 Antisense, RP_040826_01_G09, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org