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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJA4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJA4 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
182.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
92.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
51.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.4
537
Tumor
1.3
877
Tumor
1.2
697
Tumor
1.0
211
Tumor
1.0
1031
Tumor
1.0
571
Tumor
0.9
815
Tumor
0.9
663
Tumor
0.9
553
Tumor
0.8
1013
Tumor
0.7
671
Tumor
0.7
447
Tumor
0.7
863
Tumor
0.7
641
Tumor
0.7
283
Tumor
0.7
823
Tumor
0.7
967
Tumor
0.6
1021
Tumor
0.6
975
Tumor
0.6
262
Normal
0.6
113
Tumor
0.6
536
Normal
0.6
713
Tumor
0.6
567
Tumor
0.6
271
Tumor
0.6
865
Tumor
0.5
272
Normal
0.5
917
Tumor
0.5
258
Normal
0.5
635
Tumor
0.5
535
Tumor
0.5
161
Tumor
0.5
925
Tumor
0.5
517
Tumor
0.5
558
Normal
0.5
232
Normal
0.4
924
Normal
0.4
224
Normal
0.4
213
Tumor
0.4
125
Tumor
0.4
698
Normal
0.4
328
Normal
0.4
188
Normal
0.4
171
Tumor
0.3
123
Tumor
0.3
857
Tumor
0.3
525
Tumor
0.3
868
Normal
0.3
956
Normal
0.3
813
Tumor
0.3
866
Normal
0.3
268
Normal
0.3
1046
Normal
0.3
921
Tumor
0.3
818
Normal
0.3
938
Normal
0.3
884
Normal
0.3
1026
Normal
0.3
922
Normal
0.3
861
Tumor
0.3
867
Tumor
0.3
327
Tumor
0.3
978
Normal
0.3
574
Normal
0.3
874
Normal
0.3
483
Tumor
0.3
368
Normal
0.3
1025
Tumor
0.3
367
Tumor
0.3
953
Tumor
0.3
926
Normal
0.3
433
Tumor
0.3
944
Normal
0.3
412
Normal
0.3
916
Normal
0.3
964
Normal
0.2
498
Normal
0.2
672
Normal
0.2
918
Normal
0.2
873
Tumor
0.2
721
Tumor
0.2
228
Normal
0.2
864
Normal
0.2
364
Normal
0.2
568
Normal
0.2
1028
Normal
0.2
966
Normal
0.2
448
Normal
0.2
722
Normal
0.2
746
Normal
0.2
816
Normal
0.2
958
Normal
0.2
862
Normal
0.2
661
Tumor
0.2
538
Normal
0.2
557
Tumor
0.2
192
Normal
0.2
914
Normal
0.2
937
Tumor
0.2
356
Normal
0.2
128
Normal
0.2
384
Normal
0.2
172
Normal
0.2
982
Normal
0.2
423
Tumor
0.2
212
Normal
0.2
923
Tumor
0.2
148
Normal
0.2
981
Tumor
0.2
573
Tumor
0.2
955
Tumor
0.1
464
Normal
0.1
114
Normal
0.1
572
Normal
0.1
714
Normal
0.1
111
Normal
0.1
353
Tumor
0.1
968
Normal
0.1
915
Tumor
0.1
415
Tumor
0.1
366
Normal
0.1
715
Tumor
0.1
564
Normal
0.1
1016
Normal
0.1
1042
Normal
0.1
954
Normal
0.1
344
Normal
0.1
965
Tumor
0.1
191
Tumor
0.1
662
Normal
0.1
881
Tumor
0.1
491
Tumor
0.1
882
Normal
0.1
696
Normal
0.1
814
Normal
0.1
126
Normal
0.1
427
Tumor
0.1
534
Normal
0.1
456
Normal
0.1
554
Normal
0.1
362
Normal
0.1
951
Tumor
0.1
145
Tumor
0.1
666
Normal
0.1
952
Normal
0.1
852
Normal
0.1
463
Tumor
0.1
528
Normal
0.1
217
Tumor
0.1
162
Normal
0.1
1044
Normal
0.1
546
Normal
0.1
186
Normal
0.0
943
Tumor
0.0
468
Normal
0.0
223
Tumor
0.0
984
Normal
0.0
745
Tumor
0.0
376
Normal
0.0
1014
Normal
0.0
285
Tumor
0.0
411
Tumor
0.0
284
Normal
0.0
983
Tumor
0.0
636
Normal
0.0
524
Normal
0.0
195
Tumor
0.0
686
Normal
0.0
545
Tumor
0.0
185
Tumor
0.0
286
Normal
0.0
778
Normal
0.0
976
Normal
0.0
617
Tumor
0.0
756
Normal
0.0
716
Normal
0.0
526
Normal
0.0
977
Tumor
0.0
878
Normal
0.0
416
Normal
0.0
824
Normal
0.0
618
Normal
0.0
142
Normal
0.0
452
Normal
0.0
357
Tumor
0.0
227
Tumor
0.0
358
Normal
0.0
628
Normal
0.0
563
Tumor
0.0
627
Tumor
-0.1
685
Tumor
-0.1
492
Normal
-0.1
518
Normal
-0.1
695
Tumor
-0.1
127
Tumor
-0.1
912
Normal
-0.1
786
Normal
-0.1
354
Normal
-0.1
858
Normal
-0.1
963
Tumor
-0.1
352
Normal
-0.1
355
Tumor
-0.1
514
Normal
-0.1
642
Normal
-0.1
466
Normal
-0.1
383
Tumor
-0.1
342
Normal
-0.1
451
Tumor
-0.1
187
Tumor
-0.1
488
Normal
-0.1
147
Tumor
-0.1
648
Normal
-0.1
1045
Tumor
-0.1
785
Tumor
-0.1
422
Normal
-0.1
112
Tumor
-0.1
817
Tumor
-0.1
467
Tumor
-0.1
436
Normal
-0.1
1032
Normal
-0.1
494
Normal
-0.2
851
Tumor
-0.2
351
Tumor
-0.2
665
Tumor
-0.2
616
Normal
-0.2
1022
Normal
-0.2
516
Normal
-0.2
533
Tumor
-0.2
1015
Tumor
-0.2
421
Tumor
-0.2
913
Tumor
-0.2
957
Tumor
-0.2
137
Tumor
-0.2
363
Tumor
-0.2
1043
Tumor
-0.2
218
Normal
-0.2
341
Tumor
-0.2
527
Tumor
-0.3
883
Tumor
-0.3
484
Normal
-0.3
446
Normal
-0.3
124
Normal
-0.3
428
Normal
-0.3
221
Tumor
-0.3
434
Normal
-0.3
231
Tumor
-0.3
214
Normal
-0.3
497
Tumor
-0.3
523
Tumor
-0.3
267
Tumor
-0.3
138
Normal
-0.3
261
Tumor
-0.3
455
Tumor
-0.3
755
Tumor
-0.3
146
Normal
-0.4
515
Tumor
-0.4
1041
Tumor
-0.4
196
Normal
-0.4
432
Normal
-0.4
664
Normal
-0.4
777
Tumor
-0.4
414
Normal
-0.4
135
Tumor
-0.4
136
Normal
-0.4
413
Tumor
-0.4
911
Tumor
-0.4
141
Tumor
-0.4
426
Normal
-0.4
343
Tumor
-0.5
1027
Tumor
-0.5
513
Tumor
-0.5
361
Tumor
-0.5
615
Tumor
-0.5
493
Tumor
-0.5
424
Normal
-0.5
465
Tumor
-0.5
365
Tumor
-0.5
131
Tumor
-0.6
222
Normal
-0.6
132
Normal
-0.6
445
Tumor
-0.6
444
Normal
-0.6
443
Tumor
-0.7
257
Tumor
-0.7
425
Tumor
-0.8
375
Tumor
-0.8
435
Tumor
-0.8
431
Tumor
-0.9
647
Tumor
-1.1
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.