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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEIL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEIL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
94.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.7
954
Normal
1.3
686
Normal
1.2
666
Normal
1.0
944
Normal
1.0
786
Normal
1.0
672
Normal
0.9
395
Tumor
0.9
938
Normal
0.9
615
Tumor
0.9
568
Normal
0.9
756
Normal
0.9
661
Tumor
0.8
327
Tumor
0.8
477
Tumor
0.8
744
Normal
0.8
217
Tumor
0.7
231
Tumor
0.7
778
Normal
0.7
192
Normal
0.7
557
Tumor
0.6
392
Normal
0.6
636
Normal
0.6
218
Normal
0.6
696
Normal
0.6
664
Normal
0.6
648
Normal
0.6
195
Tumor
0.6
572
Normal
0.6
467
Tumor
0.6
396
Normal
0.6
955
Tumor
0.6
394
Normal
0.6
943
Tumor
0.6
858
Normal
0.5
222
Normal
0.5
952
Normal
0.5
446
Normal
0.5
878
Normal
0.5
926
Normal
0.5
196
Normal
0.5
452
Normal
0.5
464
Normal
0.5
866
Normal
0.5
171
Tumor
0.5
558
Normal
0.5
977
Tumor
0.5
963
Tumor
0.5
434
Normal
0.5
414
Normal
0.4
714
Normal
0.4
956
Normal
0.4
882
Normal
0.4
957
Tumor
0.4
912
Normal
0.4
716
Normal
0.4
722
Normal
0.4
148
Normal
0.4
191
Tumor
0.4
432
Normal
0.4
742
Normal
0.4
616
Normal
0.4
922
Normal
0.4
881
Tumor
0.4
862
Normal
0.4
268
Normal
0.4
746
Normal
0.4
356
Normal
0.4
874
Normal
0.4
368
Normal
0.4
436
Normal
0.4
391
Tumor
0.4
162
Normal
0.4
814
Normal
0.4
461
Tumor
0.4
868
Normal
0.3
785
Tumor
0.3
258
Normal
0.3
818
Normal
0.3
422
Normal
0.3
444
Normal
0.3
272
Normal
0.3
662
Normal
0.3
376
Normal
0.3
884
Normal
0.3
738
Normal
0.3
466
Normal
0.3
426
Normal
0.3
642
Normal
0.3
914
Normal
0.3
921
Tumor
0.3
728
Normal
0.3
185
Tumor
0.3
366
Normal
0.3
964
Normal
0.3
227
Tumor
0.3
864
Normal
0.2
232
Normal
0.2
124
Normal
0.2
564
Normal
0.2
924
Normal
0.2
563
Tumor
0.2
172
Normal
0.2
213
Tumor
0.2
386
Normal
0.2
221
Tumor
0.2
445
Tumor
0.2
161
Tumor
0.2
384
Normal
0.2
362
Normal
0.2
388
Normal
0.2
147
Tumor
0.2
824
Normal
0.2
574
Normal
0.2
186
Normal
0.2
471
Tumor
0.2
424
Normal
0.2
428
Normal
0.2
618
Normal
0.2
665
Tumor
0.2
857
Tumor
0.2
365
Tumor
0.2
916
Normal
0.2
188
Normal
0.2
214
Normal
0.2
456
Normal
0.2
114
Normal
0.2
433
Tumor
0.2
364
Normal
0.1
671
Tumor
0.1
873
Tumor
0.1
815
Tumor
0.1
286
Normal
0.1
966
Normal
0.1
723
Tumor
0.1
262
Normal
0.1
968
Normal
0.1
328
Normal
0.1
628
Normal
0.1
852
Normal
0.1
112
Tumor
0.1
123
Tumor
0.1
111
Normal
0.1
727
Tumor
0.1
641
Tumor
0.1
468
Normal
0.1
416
Normal
0.1
187
Tumor
0.0
128
Normal
0.0
627
Tumor
0.0
817
Tumor
0.0
721
Tumor
0.0
816
Normal
0.0
473
Tumor
0.0
285
Tumor
0.0
212
Normal
0.0
823
Tumor
0.0
284
Normal
0.0
421
Tumor
0.0
917
Tumor
-0.1
474
Normal
-0.1
443
Tumor
-0.1
925
Tumor
-0.1
228
Normal
-0.1
573
Tumor
-0.1
412
Normal
-0.1
431
Tumor
-0.1
361
Tumor
-0.1
271
Tumor
-0.1
851
Tumor
-0.1
867
Tumor
-0.1
383
Tumor
-0.1
224
Normal
-0.1
975
Tumor
-0.1
863
Tumor
-0.1
976
Normal
-0.1
635
Tumor
-0.2
126
Normal
-0.2
918
Normal
-0.2
951
Tumor
-0.2
958
Normal
-0.2
427
Tumor
-0.2
813
Tumor
-0.2
915
Tumor
-0.2
883
Tumor
-0.2
387
Tumor
-0.2
127
Tumor
-0.2
113
Tumor
-0.2
923
Tumor
-0.3
261
Tumor
-0.3
462
Normal
-0.3
482
Normal
-0.3
481
Tumor
-0.3
953
Tumor
-0.3
737
Tumor
-0.3
913
Tumor
-0.3
413
Tumor
-0.3
982
Normal
-0.3
411
Tumor
-0.4
713
Tumor
-0.4
451
Tumor
-0.4
663
Tumor
-0.4
647
Tumor
-0.4
415
Tumor
-0.4
367
Tumor
-0.4
393
Tumor
-0.4
472
Normal
-0.4
375
Tumor
-0.4
125
Tumor
-0.4
455
Tumor
-0.4
741
Tumor
-0.4
385
Tumor
-0.4
355
Tumor
-0.4
685
Tumor
-0.5
755
Tumor
-0.5
865
Tumor
-0.5
911
Tumor
-0.5
423
Tumor
-0.5
937
Tumor
-0.5
877
Tumor
-0.5
981
Tumor
-0.5
1013
Tumor
-0.5
435
Tumor
-0.5
267
Tumor
-0.5
478
Normal
-0.6
363
Tumor
-0.6
1016
Normal
-0.6
617
Tumor
-0.6
1014
Normal
-0.6
745
Tumor
-0.6
861
Tumor
-0.6
984
Normal
-0.6
777
Tumor
-0.6
567
Tumor
-0.6
257
Tumor
-0.7
724
Normal
-0.7
1015
Tumor
-0.7
223
Tumor
-0.8
967
Tumor
-0.8
211
Tumor
-0.8
965
Tumor
-0.8
283
Tumor
-0.9
571
Tumor
-0.9
425
Tumor
-0.9
743
Tumor
-0.9
715
Tumor
-1.0
463
Tumor
-1.1
978
Normal
-1.2
465
Tumor
-1.2
695
Tumor
-1.4
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
277
Tumor
N/A
278
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
311
Tumor
N/A
553
Tumor
N/A
312
Normal
N/A
554
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
