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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
394.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
285.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
223.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
206.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
169.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
159.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
156.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
145.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
144.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
142.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
139.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
137.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
137.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
135.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
135.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
132.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
126.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
126.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
122.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
120.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
119.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
119.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
119.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
117.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
113.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
111.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
111.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
107.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
105.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
104.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
104.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
100.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
99.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
98.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
98.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
94.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
94.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
93.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
92.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
92.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
92.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
91.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
91.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
91.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
90.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
89.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
86.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
86.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
85.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
82.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
81.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
81.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
81.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
80.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
80.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
79.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
74.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
73.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
73.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
72.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
72.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
71.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
69.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
69.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
69.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
68.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
68.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
67.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
66.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
65.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
65.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
64.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
61.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
60.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
58.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
56.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
56.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
56.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
55.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
54.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
54.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
53.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
52.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
51.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
50.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
50.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
50.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
49.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
48.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
48.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
47.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
43.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
43.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
42.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
42.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
40.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
38.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
38.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPAN3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.5
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
227.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
193.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
125.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
123.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
111.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
107.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
107.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
94.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
80.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
78.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
75.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
75.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
74.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
74.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
70.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
64.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
51.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
385
Tumor
2.4
617
Tumor
1.8
515
Tumor
1.4
983
Tumor
1.3
328
Normal
1.0
1013
Tumor
1.0
715
Tumor
1.0
545
Tumor
1.0
917
Tumor
0.9
498
Normal
0.8
695
Tumor
0.8
1015
Tumor
0.8
363
Tumor
0.8
1016
Normal
0.8
713
Tumor
0.7
697
Tumor
0.7
364
Normal
0.7
444
Normal
0.6
493
Tumor
0.6
636
Normal
0.6
172
Normal
0.5
424
Normal
0.5
393
Tumor
0.5
536
Normal
0.5
467
Tumor
0.5
446
Normal
0.5
954
Normal
0.5
482
Normal
0.5
314
Normal
0.5
162
Normal
0.5
148
Normal
0.5
432
Normal
0.5
414
Normal
0.4
445
Tumor
0.4
146
Normal
0.4
443
Tumor
0.4
428
Normal
0.4
278
Normal
0.4
447
Tumor
0.4
1014
Normal
0.4
433
Tumor
0.4
1046
Normal
0.4
524
Normal
0.4
434
Normal
0.4
186
Normal
0.4
938
Normal
0.4
641
Tumor
0.4
721
Tumor
0.4
483
Tumor
0.4
516
Normal
0.4
464
Normal
0.4
514
Normal
0.4
312
Normal
0.3
188
Normal
0.3
426
Normal
0.3
448
Normal
0.3
777
Tumor
0.3
491
Tumor
0.3
136
Normal
0.3
943
Tumor
0.3
187
Tumor
0.3
863
Tumor
0.3
984
Normal
0.3
484
Normal
0.3
1045
Tumor
0.2
436
Normal
0.2
332
Normal
0.2
535
Tumor
0.2
435
Tumor
0.2
394
Normal
0.2
642
Normal
0.2
528
Normal
0.2
618
Normal
0.2
388
Normal
0.2
472
Normal
0.2
944
Normal
0.2
628
Normal
0.2
452
Normal
0.2
538
Normal
0.1
396
Normal
0.1
415
Tumor
0.1
497
Tumor
0.1
488
Normal
0.1
386
Normal
0.1
395
Tumor
0.1
918
Normal
0.1
923
Tumor
0.1
756
Normal
0.1
492
Normal
0.1
916
Normal
0.1
755
Tumor
0.1
982
Normal
0.1
698
Normal
0.1
785
Tumor
0.1
978
Normal
0.1
355
Tumor
0.1
431
Tumor
0.1
616
Normal
0.1
926
Normal
0.1
627
Tumor
0.1
518
Normal
0.1
132
Normal
0.0
868
Normal
0.0
463
Tumor
0.0
924
Normal
0.0
392
Normal
0.0
952
Normal
0.0
268
Normal
0.0
517
Tumor
0.0
481
Tumor
0.0
937
Tumor
0.0
922
Normal
0.0
527
Tumor
0.0
526
Normal
0.0
487
Tumor
0.0
423
Tumor
0.0
955
Tumor
0.0
468
Normal
0.0
474
Normal
0.0
145
Tumor
0.0
141
Tumor
0.0
416
Normal
0.0
298
Normal
-0.1
462
Normal
-0.1
455
Tumor
-0.1
956
Normal
-0.1
1044
Normal
-0.1
137
Tumor
-0.1
615
Tumor
-0.1
422
Normal
-0.1
786
Normal
-0.1
1043
Tumor
-0.1
953
Tumor
-0.1
311
Tumor
-0.1
135
Tumor
-0.1
874
Normal
-0.1
391
Tumor
-0.1
297
Tumor
-0.1
142
Normal
-0.1
131
Tumor
-0.1
716
Normal
-0.2
456
Normal
-0.2
138
Normal
-0.2
466
Normal
-0.2
262
Normal
-0.2
232
Normal
-0.2
814
Normal
-0.2
461
Tumor
-0.2
185
Tumor
-0.2
862
Normal
-0.2
356
Normal
-0.2
866
Normal
-0.2
161
Tumor
-0.2
778
Normal
-0.3
554
Normal
-0.3
258
Normal
-0.3
714
Normal
-0.3
537
Tumor
-0.3
478
Normal
-0.3
413
Tumor
-0.3
277
Tumor
-0.3
451
Tumor
-0.3
387
Tumor
-0.3
494
Normal
-0.3
534
Normal
-0.3
327
Tumor
-0.4
523
Tumor
-0.4
412
Normal
-0.4
864
Normal
-0.4
873
Tumor
-0.4
546
Normal
-0.4
981
Tumor
-0.4
635
Tumor
-0.4
473
Tumor
-0.4
722
Normal
-0.4
477
Tumor
-0.4
746
Normal
-0.4
921
Tumor
-0.4
925
Tumor
-0.4
272
Normal
-0.4
553
Tumor
-0.5
231
Tumor
-0.5
915
Tumor
-0.5
533
Tumor
-0.5
686
Normal
-0.5
313
Tumor
-0.6
745
Tumor
-0.6
513
Tumor
-0.6
421
Tumor
-0.6
465
Tumor
-0.6
411
Tumor
-0.6
525
Tumor
-0.6
865
Tumor
-0.6
147
Tumor
-0.6
171
Tumor
-0.6
813
Tumor
-0.6
696
Normal
-0.7
425
Tumor
-0.7
331
Tumor
-0.7
977
Tumor
-0.7
861
Tumor
-0.7
951
Tumor
-0.7
125
Tumor
-0.8
867
Tumor
-0.8
471
Tumor
-0.8
427
Tumor
-0.8
267
Tumor
-0.9
685
Tumor
-1.0
271
Tumor
-1.0
257
Tumor
-1.0
126
Normal
-1.1
261
Tumor
-1.1
124
Normal
-1.1
111
Normal
-1.2
114
Normal
-1.4
112
Tumor
-1.5
127
Tumor
-1.6
113
Tumor
-1.9
123
Tumor
-1.9
128
Normal
-2.0
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
957
Tumor
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
