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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BNIP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BNIP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.8
661
Tumor
0.7
666
Normal
0.6
368
Normal
0.6
331
Tumor
0.6
366
Normal
0.6
421
Tumor
0.6
137
Tumor
0.6
384
Normal
0.5
434
Normal
0.5
268
Normal
0.5
367
Tumor
0.5
563
Tumor
0.5
636
Normal
0.5
722
Normal
0.5
132
Normal
0.5
361
Tumor
0.5
744
Normal
0.5
672
Normal
0.5
662
Normal
0.5
138
Normal
0.5
192
Normal
0.4
232
Normal
0.4
136
Normal
0.4
627
Tumor
0.4
343
Tumor
0.4
262
Normal
0.4
917
Tumor
0.4
814
Normal
0.4
311
Tumor
0.4
648
Normal
0.4
362
Normal
0.4
862
Normal
0.4
283
Tumor
0.4
664
Normal
0.4
628
Normal
0.4
863
Tumor
0.4
922
Normal
0.4
383
Tumor
0.4
426
Normal
0.4
447
Tumor
0.4
146
Normal
0.4
224
Normal
0.4
272
Normal
0.4
574
Normal
0.4
357
Tumor
0.4
396
Normal
0.4
258
Normal
0.4
864
Normal
0.4
358
Normal
0.4
424
Normal
0.4
914
Normal
0.4
141
Tumor
0.4
926
Normal
0.4
982
Normal
0.4
443
Tumor
0.4
188
Normal
0.4
468
Normal
0.3
394
Normal
0.3
388
Normal
0.3
461
Tumor
0.3
135
Tumor
0.3
444
Normal
0.3
686
Normal
0.3
211
Tumor
0.3
918
Normal
0.3
414
Normal
0.3
148
Normal
0.3
618
Normal
0.3
742
Normal
0.3
778
Normal
0.3
172
Normal
0.3
376
Normal
0.3
187
Tumor
0.3
422
Normal
0.3
162
Normal
0.3
218
Normal
0.3
413
Tumor
0.3
724
Normal
0.3
354
Normal
0.3
568
Normal
0.3
642
Normal
0.3
573
Tumor
0.3
868
Normal
0.3
375
Tumor
0.3
452
Normal
0.3
564
Normal
0.3
217
Tumor
0.3
723
Tumor
0.3
617
Tumor
0.3
874
Normal
0.3
284
Normal
0.3
392
Normal
0.3
186
Normal
0.3
456
Normal
0.3
344
Normal
0.3
536
Normal
0.3
916
Normal
0.3
866
Normal
0.3
572
Normal
0.3
728
Normal
0.3
196
Normal
0.3
428
Normal
0.3
433
Tumor
0.3
432
Normal
0.3
745
Tumor
0.3
464
Normal
0.3
858
Normal
0.2
878
Normal
0.2
818
Normal
0.2
145
Tumor
0.2
671
Tumor
0.2
558
Normal
0.2
427
Tumor
0.2
738
Normal
0.2
257
Tumor
0.2
423
Tumor
0.2
877
Tumor
0.2
365
Tumor
0.2
286
Normal
0.2
746
Normal
0.2
353
Tumor
0.2
978
Normal
0.2
663
Tumor
0.2
213
Tumor
0.2
466
Normal
0.2
124
Normal
0.2
976
Normal
0.2
342
Normal
0.2
436
Normal
0.2
352
Normal
0.2
222
Normal
0.2
312
Normal
0.2
498
Normal
0.2
214
Normal
0.2
114
Normal
0.2
954
Normal
0.2
386
Normal
0.2
984
Normal
0.2
816
Normal
0.2
713
Tumor
0.2
387
Tumor
0.2
616
Normal
0.2
924
Normal
0.2
185
Tumor
0.2
647
Tumor
0.2
567
Tumor
0.2
1043
Tumor
0.2
356
Normal
0.2
968
Normal
0.2
528
Normal
0.2
191
Tumor
0.2
786
Normal
0.2
385
Tumor
0.2
721
Tumor
0.2
743
Tumor
0.2
944
Normal
0.2
1022
Normal
0.2
1044
Normal
0.2
111
Normal
0.2
964
Normal
0.2
125
Tumor
0.2
332
Normal
0.1
1028
Normal
0.1
824
Normal
0.1
223
Tumor
0.1
395
Tumor
0.1
411
Tumor
0.1
462
Normal
0.1
1046
Normal
0.1
435
Tumor
0.1
261
Tumor
0.1
1014
Normal
0.1
271
Tumor
0.1
912
Normal
0.1
446
Normal
0.1
431
Tumor
0.1
966
Normal
0.1
228
Normal
0.1
884
Normal
0.1
867
Tumor
0.1
665
Tumor
0.1
195
Tumor
0.1
852
Normal
0.1
737
Tumor
0.1
278
Normal
0.1
341
Tumor
0.1
1016
Normal
0.1
298
Normal
0.1
956
Normal
0.1
142
Normal
0.1
716
Normal
0.1
1015
Tumor
0.1
277
Tumor
0.1
813
Tumor
0.1
881
Tumor
0.1
126
Normal
0.1
351
Tumor
0.1
314
Normal
0.1
297
Tumor
0.1
328
Normal
0.0
1021
Tumor
0.0
445
Tumor
0.0
1042
Normal
0.0
915
Tumor
0.0
212
Normal
0.0
391
Tumor
0.0
147
Tumor
0.0
938
Normal
0.0
714
Normal
0.0
698
Normal
0.0
952
Normal
0.0
1031
Tumor
0.0
883
Tumor
0.0
363
Tumor
0.0
851
Tumor
0.0
1032
Normal
0.0
955
Tumor
0.0
231
Tumor
0.0
882
Normal
0.0
128
Normal
0.0
696
Normal
0.0
861
Tumor
0.0
527
Tumor
0.0
953
Tumor
0.0
981
Tumor
0.0
467
Tumor
0.0
451
Tumor
0.0
412
Normal
0.0
488
Normal
0.0
448
Normal
0.0
267
Tumor
0.0
873
Tumor
0.0
161
Tumor
-0.1
958
Normal
-0.1
416
Normal
-0.1
514
Normal
-0.1
313
Tumor
-0.1
465
Tumor
-0.1
327
Tumor
-0.1
364
Normal
-0.1
524
Normal
-0.1
535
Tumor
-0.1
1026
Normal
-0.1
113
Tumor
-0.1
923
Tumor
-0.1
112
Tumor
-0.1
983
Tumor
-0.1
1045
Tumor
-0.1
943
Tumor
-0.1
482
Normal
-0.1
975
Tumor
-0.2
741
Tumor
-0.2
777
Tumor
-0.2
533
Tumor
-0.2
951
Tumor
-0.2
127
Tumor
-0.2
227
Tumor
-0.2
615
Tumor
-0.2
1027
Tumor
-0.2
921
Tumor
-0.2
526
Normal
-0.2
756
Normal
-0.2
285
Tumor
-0.2
538
Normal
-0.2
857
Tumor
-0.2
755
Tumor
-0.2
494
Normal
-0.2
517
Tumor
-0.2
571
Tumor
-0.2
546
Normal
-0.2
131
Tumor
-0.2
697
Tumor
-0.2
641
Tumor
-0.2
171
Tumor
-0.2
478
Normal
-0.3
515
Tumor
-0.3
911
Tumor
-0.3
484
Normal
-0.3
463
Tumor
-0.3
123
Tumor
-0.3
815
Tumor
-0.3
474
Normal
-0.3
534
Normal
-0.3
817
Tumor
-0.3
977
Tumor
-0.3
415
Tumor
-0.3
963
Tumor
-0.3
715
Tumor
-0.4
472
Normal
-0.4
925
Tumor
-0.4
497
Tumor
-0.4
518
Normal
-0.4
492
Normal
-0.4
1013
Tumor
-0.4
491
Tumor
-0.4
537
Tumor
-0.4
937
Tumor
-0.4
727
Tumor
-0.4
516
Normal
-0.4
221
Tumor
-0.4
913
Tumor
-0.4
557
Tumor
-0.4
785
Tumor
-0.4
471
Tumor
-0.4
554
Normal
-0.5
823
Tumor
-0.5
1025
Tumor
-0.5
477
Tumor
-0.6
865
Tumor
-0.6
493
Tumor
-0.6
455
Tumor
-0.6
685
Tumor
-0.6
355
Tumor
-0.6
965
Tumor
-0.6
545
Tumor
-0.6
487
Tumor
-0.6
1041
Tumor
-0.6
553
Tumor
-0.6
481
Tumor
-0.7
967
Tumor
-0.7
393
Tumor
-0.7
525
Tumor
-0.7
957
Tumor
-0.7
695
Tumor
-0.8
513
Tumor
-0.8
523
Tumor
-0.8
483
Tumor
-0.9
635
Tumor
-1.0
473
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
