MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:36.4 nTPM
GTEx:23.6 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:46.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2019 Male, age 18, unknown 32.3
2586 Male, age 75, left hemisphere 30.2
2411 Female, age 72, unknown 29.3
2219 Male, age 76, both hemispheres 28.5
2666 Male, age 74, left hemisphere 28.4
1827 Male, age 72, unknown 27.4
2828 Female, age 72, unknown 23.2
1870 Female, age 42, unknown 22.4
1833 Male, age 53, unknown 22.0
1830 Male, age 51, unknown 21.7
Dorsal raphe nucleus
nTPM: 30.0
2298 Female, age 72, unknown 38.7
2047 Male, age 72, unknown 32.1
2750 Male, age 76, both hemispheres 31.8
1828 Male, age 53, unknown 25.3
2016 Female, age 72, unknown 21.9
Inferior colliculus
nTPM: 27.2
2097 Female, age 72, unknown 35.0
1848 Female, age 42, unknown 26.4
1890 Male, age 53, unknown 25.6
2849 Male, age 72, unknown 21.8
Median raphe nucleus
nTPM: 36.4
2220 Male, age 76, midline 36.4
Periaquaductal grey, anterior
nTPM: 31.5
2502 Female, age 75, unknown 32.5
1947 Male, age 18, unknown 31.4
1795 Male, age 51, unknown 30.6
Periaquaductal grey, dorsal
nTPM: 25.4
1840 Male, age 53, unknown 30.0
2464 Female, age 72, unknown 26.9
1831 Male, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 20.8
Periaquaductal grey, lateral
nTPM: 21.2
2272 Male, age 74, both hemispheres 22.0
2140 Male, age 76, both hemispheres 21.3
2053 Male, age 18, unknown 20.4
Pretectal area
nTPM: 31.4
1944 Female, age 72, unknown 44.6
1816 Male, age 51, unknown 43.9
2007 Male, age 72, unknown 43.1
1817 Female, age 42, unknown 38.6
1815 Male, age 53, unknown 35.1
2224 Female, age 72, unknown 28.9
2667 Female, age 75, unknown 26.0
2825 Male, age 18, unknown 22.6
2316 Male, age 76, right hemisphere 22.3
2273 Male, age 74, both hemispheres 21.3
2407 Male, age 75, both hemispheres 19.4
Red nucleus
nTPM: 21.3
2584 Male, age 75, left hemisphere 28.9
2785 Male, age 18, unknown 28.5
1821 Female, age 72, unknown 24.1
2725 Female, age 75, unknown 23.7
1954 Female, age 42, unknown 20.0
2588 Male, age 74, left hemisphere 19.8
2503 Female, age 72, unknown 19.2
1904 Male, age 53, unknown 19.0
2227 Male, age 72, unknown 19.0
2823 Male, age 76, right hemisphere 18.9
2769 Male, age 72, unknown 18.8
1865 Male, age 51, unknown 16.0
Substantia nigra
nTPM: 34.1
1941 Male, age 53, unknown 42.8
2665 Male, age 74, both hemispheres 42.0
2241 Male, age 72, unknown 41.3
1916 Female, age 42, unknown 40.6
1889 Female, age 72, unknown 36.0
1851 Male, age 51, unknown 34.4
2409 Female, age 72, unknown 29.0
2583 Male, age 75, right hemisphere 27.7
2590 Female, age 75, unknown 25.9
2699 Male, age 18, unknown 21.0
Superior colliculus
nTPM: 26.6
2261 Male, age 18, unknown 34.5
2668 Female, age 75, unknown 33.3
2087 Female, age 72, unknown 32.4
1796 Male, age 53, unknown 27.2
1895 Male, age 76, right hemisphere 25.5
1839 Male, age 51, unknown 25.1
2664 Male, age 75, both hemispheres 23.4
2587 Male, age 74, left hemisphere 22.6
1913 Female, age 42, unknown 21.1
1995 Male, age 72, unknown 20.5
Ventral tegmental area
nTPM: 30.6
2218 Male, age 76, both hemispheres 34.7
2410 Female, age 72, unknown 34.3
1942 Male, age 51, unknown 33.8
1915 Female, age 42, unknown 33.4
2021 Male, age 53, unknown 25.8
2223 Female, age 72, unknown 21.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 76.2
Min nTPM: 8.6
Std nTPM: 9.9
Median nTPM: 22.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 54.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 45.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 40.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 39.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 37.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 24.8
Min nTPM: 6.2
Sample A Female 24.8
Sample B Female 12.5
Sample C Male 18.3
Sample D Male 6.2
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 13.4
Sample C Male 23.9
Sample D Male 20.0
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 16.1
Min nTPM: 10.6
Sample B Female 10.9
Sample C Male 16.1
Sample D Male 10.6
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 11.8
Sample A Female 20.7
Sample B Female 11.8
Sample C Male 22.0
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 45.4
Sample A Male 46.8
Sample B Male 45.4
Sample C Female 47.1
Sample D Female 47.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
74988572 Antisense, RP_060315_05_F02, Mouse strain C57BL/6J (56 days, male) 2.1
70474893 Antisense, RP_050623_01_C09, Mouse strain C57BL/6J (56 days, male) 1.2

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