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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB15 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB15 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
713
Tumor
0.7
1025
Tumor
0.7
745
Tumor
0.6
491
Tumor
0.6
567
Tumor
0.6
527
Tumor
0.5
537
Tumor
0.5
573
Tumor
0.5
1027
Tumor
0.4
917
Tumor
0.4
851
Tumor
0.4
125
Tumor
0.4
147
Tumor
0.4
227
Tumor
0.4
257
Tumor
0.3
877
Tumor
0.3
815
Tumor
0.3
697
Tumor
0.3
1032
Normal
0.3
724
Normal
0.3
223
Tumor
0.3
685
Tumor
0.3
1031
Tumor
0.3
813
Tumor
0.3
385
Tumor
0.3
557
Tumor
0.3
817
Tumor
0.3
283
Tumor
0.3
921
Tumor
0.2
1042
Normal
0.2
957
Tumor
0.2
1021
Tumor
0.2
1026
Normal
0.2
967
Tumor
0.2
1022
Normal
0.2
721
Tumor
0.2
1013
Tumor
0.2
617
Tumor
0.2
327
Tumor
0.2
471
Tumor
0.2
755
Tumor
0.2
923
Tumor
0.2
823
Tumor
0.2
517
Tumor
0.2
368
Normal
0.2
135
Tumor
0.2
1044
Normal
0.2
435
Tumor
0.2
938
Normal
0.2
984
Normal
0.2
953
Tumor
0.2
343
Tumor
0.2
545
Tumor
0.2
641
Tumor
0.2
1028
Normal
0.2
285
Tumor
0.2
524
Normal
0.2
978
Normal
0.2
968
Normal
0.2
145
Tumor
0.2
857
Tumor
0.2
413
Tumor
0.2
884
Normal
0.2
727
Tumor
0.2
553
Tumor
0.1
146
Normal
0.1
421
Tumor
0.1
1014
Normal
0.1
868
Normal
0.1
463
Tumor
0.1
558
Normal
0.1
824
Normal
0.1
311
Tumor
0.1
523
Tumor
0.1
363
Tumor
0.1
862
Normal
0.1
861
Tumor
0.1
1015
Tumor
0.1
778
Normal
0.1
563
Tumor
0.1
816
Normal
0.1
981
Tumor
0.1
211
Tumor
0.1
361
Tumor
0.1
958
Normal
0.1
533
Tumor
0.1
916
Normal
0.1
977
Tumor
0.1
447
Tumor
0.1
852
Normal
0.1
571
Tumor
0.1
881
Tumor
0.1
635
Tumor
0.1
867
Tumor
0.1
525
Tumor
0.1
873
Tumor
0.1
964
Normal
0.1
715
Tumor
0.1
195
Tumor
0.1
313
Tumor
0.1
954
Normal
0.1
131
Tumor
0.1
1016
Normal
0.1
912
Normal
0.1
864
Normal
0.1
1043
Tumor
0.1
963
Tumor
0.1
384
Normal
0.1
528
Normal
0.1
983
Tumor
0.1
376
Normal
0.1
716
Normal
0.1
952
Normal
0.1
217
Tumor
0.1
922
Normal
0.1
818
Normal
0.1
1041
Tumor
0.1
536
Normal
0.1
271
Tumor
0.1
162
Normal
0.0
686
Normal
0.0
186
Normal
0.0
866
Normal
0.0
665
Tumor
0.0
351
Tumor
0.0
328
Normal
0.0
944
Normal
0.0
224
Normal
0.0
874
Normal
0.0
696
Normal
0.0
362
Normal
0.0
393
Tumor
0.0
671
Tumor
0.0
572
Normal
0.0
982
Normal
0.0
188
Normal
0.0
366
Normal
0.0
425
Tumor
0.0
966
Normal
0.0
221
Tumor
0.0
723
Tumor
0.0
863
Tumor
0.0
743
Tumor
0.0
858
Normal
0.0
882
Normal
0.0
722
Normal
0.0
975
Tumor
0.0
392
Normal
0.0
926
Normal
0.0
488
Normal
0.0
568
Normal
0.0
648
Normal
0.0
187
Tumor
0.0
616
Normal
0.0
391
Tumor
0.0
728
Normal
0.0
493
Tumor
0.0
914
Normal
0.0
445
Tumor
0.0
487
Tumor
0.0
965
Tumor
0.0
331
Tumor
0.0
191
Tumor
0.0
514
Normal
0.0
915
Tumor
0.0
478
Normal
0.0
628
Normal
0.0
976
Normal
0.0
412
Normal
0.0
937
Tumor
0.0
636
Normal
0.0
615
Tumor
0.0
943
Tumor
0.0
814
Normal
0.0
218
Normal
0.0
332
Normal
0.0
518
Normal
0.0
627
Tumor
0.0
546
Normal
0.0
364
Normal
0.0
746
Normal
0.0
498
Normal
0.0
618
Normal
0.0
356
Normal
0.0
411
Tumor
0.0
451
Tumor
0.0
647
Tumor
0.0
436
Normal
0.0
467
Tumor
0.0
664
Normal
0.0
172
Normal
0.0
185
Tumor
0.0
286
Normal
0.0
698
Normal
0.0
956
Normal
0.0
526
Normal
0.0
878
Normal
0.0
786
Normal
0.0
481
Tumor
0.0
661
Tumor
0.0
466
Normal
0.0
341
Tumor
0.0
212
Normal
0.0
564
Normal
0.0
924
Normal
0.0
756
Normal
0.0
455
Tumor
0.0
464
Normal
0.0
127
Tumor
0.0
785
Tumor
0.0
314
Normal
-0.1
448
Normal
-0.1
513
Tumor
-0.1
171
Tumor
-0.1
213
Tumor
-0.1
433
Tumor
-0.1
365
Tumor
-0.1
284
Normal
-0.1
396
Normal
-0.1
497
Tumor
-0.1
456
Normal
-0.1
196
Normal
-0.1
431
Tumor
-0.1
387
Tumor
-0.1
432
Normal
-0.1
925
Tumor
-0.1
484
Normal
-0.1
357
Tumor
-0.1
277
Tumor
-0.1
422
Normal
-0.1
228
Normal
-0.1
918
Normal
-0.1
1046
Normal
-0.1
358
Normal
-0.1
278
Normal
-0.1
415
Tumor
-0.1
574
Normal
-0.1
951
Tumor
-0.1
424
Normal
-0.1
534
Normal
-0.1
737
Tumor
-0.1
515
Tumor
-0.1
714
Normal
-0.1
955
Tumor
-0.1
395
Tumor
-0.1
148
Normal
-0.1
492
Normal
-0.1
738
Normal
-0.1
494
Normal
-0.1
352
Normal
-0.1
483
Tumor
-0.1
444
Normal
-0.1
913
Tumor
-0.1
911
Tumor
-0.1
416
Normal
-0.1
535
Tumor
-0.1
883
Tumor
-0.1
126
Normal
-0.1
142
Normal
-0.1
666
Normal
-0.1
262
Normal
-0.1
742
Normal
-0.1
662
Normal
-0.1
473
Tumor
-0.1
111
Normal
-0.1
642
Normal
-0.1
427
Tumor
-0.1
113
Tumor
-0.1
461
Tumor
-0.1
192
Normal
-0.1
214
Normal
-0.1
124
Normal
-0.1
865
Tumor
-0.1
462
Normal
-0.1
383
Tumor
-0.1
388
Normal
-0.1
554
Normal
-0.1
472
Normal
-0.1
386
Normal
-0.1
538
Normal
-0.1
353
Tumor
-0.1
367
Tumor
-0.1
434
Normal
-0.1
138
Normal
-0.1
446
Normal
-0.1
414
Normal
-0.2
777
Tumor
-0.2
394
Normal
-0.2
297
Tumor
-0.2
355
Tumor
-0.2
128
Normal
-0.2
443
Tumor
-0.2
232
Normal
-0.2
672
Normal
-0.2
354
Normal
-0.2
663
Tumor
-0.2
1045
Tumor
-0.2
516
Normal
-0.2
468
Normal
-0.2
474
Normal
-0.2
344
Normal
-0.2
375
Tumor
-0.2
261
Tumor
-0.2
272
Normal
-0.2
452
Normal
-0.2
161
Tumor
-0.2
136
Normal
-0.2
222
Normal
-0.2
141
Tumor
-0.2
741
Tumor
-0.2
312
Normal
-0.2
428
Normal
-0.2
268
Normal
-0.2
137
Tumor
-0.2
426
Normal
-0.2
482
Normal
-0.2
132
Normal
-0.2
298
Normal
-0.2
258
Normal
-0.2
695
Tumor
-0.2
342
Normal
-0.3
114
Normal
-0.3
744
Normal
-0.3
231
Tumor
-0.3
123
Tumor
-0.3
112
Tumor
-0.4
477
Tumor
-0.4
267
Tumor
-0.4
423
Tumor
-0.4
465
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
