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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRTP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
155.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
110.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
102.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
97.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
94.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
86.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
78.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
77.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
65.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
62.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
58.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
57.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
50.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
47.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
45.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
37.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRTP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
118.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
98.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
73.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
73.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
65.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
42.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
2.1
863
Tumor
1.2
635
Tumor
1.2
697
Tumor
1.0
171
Tumor
1.0
422
Normal
0.9
227
Tumor
0.8
911
Tumor
0.8
362
Normal
0.8
742
Normal
0.7
411
Tumor
0.7
955
Tumor
0.7
376
Normal
0.7
432
Normal
0.7
912
Normal
0.6
744
Normal
0.6
456
Normal
0.6
713
Tumor
0.6
698
Normal
0.6
396
Normal
0.6
918
Normal
0.6
484
Normal
0.5
636
Normal
0.5
1031
Tumor
0.5
332
Normal
0.5
172
Normal
0.5
922
Normal
0.5
161
Tumor
0.5
413
Tumor
0.5
142
Normal
0.5
464
Normal
0.5
228
Normal
0.5
128
Normal
0.5
271
Tumor
0.5
312
Normal
0.5
196
Normal
0.4
882
Normal
0.4
445
Tumor
0.4
162
Normal
0.4
481
Tumor
0.4
546
Normal
0.4
756
Normal
0.4
878
Normal
0.4
232
Normal
0.4
737
Tumor
0.4
272
Normal
0.4
568
Normal
0.4
394
Normal
0.4
446
Normal
0.4
818
Normal
0.4
685
Tumor
0.4
956
Normal
0.4
358
Normal
0.4
628
Normal
0.4
944
Normal
0.4
356
Normal
0.3
412
Normal
0.3
975
Tumor
0.3
258
Normal
0.3
298
Normal
0.3
468
Normal
0.3
131
Tumor
0.3
1046
Normal
0.3
388
Normal
0.3
571
Tumor
0.3
278
Normal
0.3
286
Normal
0.3
452
Normal
0.3
222
Normal
0.3
964
Normal
0.3
314
Normal
0.3
327
Tumor
0.3
132
Normal
0.3
186
Normal
0.3
462
Normal
0.3
954
Normal
0.3
913
Tumor
0.3
515
Tumor
0.3
146
Normal
0.3
368
Normal
0.3
824
Normal
0.3
482
Normal
0.3
648
Normal
0.3
662
Normal
0.3
392
Normal
0.3
858
Normal
0.3
746
Normal
0.3
518
Normal
0.3
433
Tumor
0.3
448
Normal
0.3
113
Tumor
0.3
1041
Tumor
0.2
466
Normal
0.2
526
Normal
0.2
982
Normal
0.2
361
Tumor
0.2
414
Normal
0.2
716
Normal
0.2
416
Normal
0.2
436
Normal
0.2
111
Normal
0.2
148
Normal
0.2
714
Normal
0.2
218
Normal
0.2
642
Normal
0.2
1014
Normal
0.2
1026
Normal
0.2
1027
Tumor
0.2
738
Normal
0.2
864
Normal
0.2
857
Tumor
0.2
421
Tumor
0.2
574
Normal
0.2
1028
Normal
0.2
938
Normal
0.2
455
Tumor
0.2
1022
Normal
0.2
881
Tumor
0.2
924
Normal
0.2
514
Normal
0.2
926
Normal
0.2
984
Normal
0.2
862
Normal
0.2
686
Normal
0.2
1016
Normal
0.2
277
Tumor
0.2
981
Tumor
0.2
572
Normal
0.2
534
Normal
0.2
384
Normal
0.2
914
Normal
0.2
564
Normal
0.2
124
Normal
0.1
866
Normal
0.1
354
Normal
0.1
451
Tumor
0.1
352
Normal
0.1
1032
Normal
0.1
813
Tumor
0.1
192
Normal
0.1
923
Tumor
0.1
786
Normal
0.1
364
Normal
0.1
558
Normal
0.1
755
Tumor
0.1
447
Tumor
0.1
342
Normal
0.1
141
Tumor
0.1
112
Tumor
0.1
663
Tumor
0.1
426
Normal
0.1
554
Normal
0.1
545
Tumor
0.1
976
Normal
0.1
214
Normal
0.1
728
Normal
0.1
262
Normal
0.1
524
Normal
0.1
618
Normal
0.1
921
Tumor
0.1
472
Normal
0.1
538
Normal
0.0
868
Normal
0.0
344
Normal
0.0
664
Normal
0.0
741
Tumor
0.0
488
Normal
0.0
434
Normal
0.0
483
Tumor
0.0
494
Normal
0.0
641
Tumor
0.0
386
Normal
0.0
415
Tumor
0.0
915
Tumor
0.0
977
Tumor
0.0
136
Normal
0.0
268
Normal
0.0
952
Normal
0.0
951
Tumor
0.0
816
Normal
0.0
428
Normal
0.0
467
Tumor
0.0
145
Tumor
0.0
884
Normal
0.0
114
Normal
0.0
723
Tumor
0.0
778
Normal
0.0
516
Normal
-0.1
224
Normal
-0.1
366
Normal
-0.1
195
Tumor
-0.1
852
Normal
-0.1
867
Tumor
-0.1
696
Normal
-0.1
627
Tumor
-0.1
126
Normal
-0.1
444
Normal
-0.1
877
Tumor
-0.1
328
Normal
-0.1
367
Tumor
-0.1
528
Normal
-0.1
1042
Normal
-0.1
474
Normal
-0.1
123
Tumor
-0.1
498
Normal
-0.1
138
Normal
-0.1
188
Normal
-0.1
471
Tumor
-0.1
1021
Tumor
-0.1
672
Normal
-0.1
557
Tumor
-0.1
217
Tumor
-0.1
517
Tumor
-0.1
127
Tumor
-0.1
443
Tumor
-0.2
463
Tumor
-0.2
666
Normal
-0.2
435
Tumor
-0.2
1044
Normal
-0.2
478
Normal
-0.2
424
Normal
-0.2
357
Tumor
-0.2
393
Tumor
-0.2
777
Tumor
-0.2
916
Normal
-0.2
284
Normal
-0.2
353
Tumor
-0.2
883
Tumor
-0.2
231
Tumor
-0.2
423
Tumor
-0.2
917
Tumor
-0.2
722
Normal
-0.3
874
Normal
-0.3
615
Tumor
-0.3
616
Normal
-0.3
523
Tumor
-0.3
461
Tumor
-0.3
966
Normal
-0.3
743
Tumor
-0.3
978
Normal
-0.3
814
Normal
-0.3
958
Normal
-0.3
937
Tumor
-0.3
785
Tumor
-0.3
968
Normal
-0.3
492
Normal
-0.3
536
Normal
-0.3
497
Tumor
-0.3
212
Normal
-0.3
191
Tumor
-0.3
267
Tumor
-0.4
395
Tumor
-0.4
493
Tumor
-0.4
963
Tumor
-0.4
573
Tumor
-0.4
425
Tumor
-0.4
695
Tumor
-0.4
965
Tumor
-0.5
1025
Tumor
-0.5
527
Tumor
-0.5
537
Tumor
-0.5
665
Tumor
-0.5
297
Tumor
-0.5
815
Tumor
-0.5
873
Tumor
-0.5
727
Tumor
-0.5
715
Tumor
-0.5
385
Tumor
-0.5
331
Tumor
-0.5
365
Tumor
-0.5
473
Tumor
-0.5
137
Tumor
-0.5
257
Tumor
-0.5
147
Tumor
-0.6
221
Tumor
-0.6
721
Tumor
-0.6
865
Tumor
-0.6
1015
Tumor
-0.6
553
Tumor
-0.6
487
Tumor
-0.6
187
Tumor
-0.6
823
Tumor
-0.6
817
Tumor
-0.6
983
Tumor
-0.7
943
Tumor
-0.7
261
Tumor
-0.7
213
Tumor
-0.7
563
Tumor
-0.7
861
Tumor
-0.7
427
Tumor
-0.7
745
Tumor
-0.7
465
Tumor
-0.7
223
Tumor
-0.7
431
Tumor
-0.7
125
Tumor
-0.7
617
Tumor
-0.8
351
Tumor
-0.8
525
Tumor
-0.8
391
Tumor
-0.8
671
Tumor
-0.8
341
Tumor
-0.8
925
Tumor
-0.8
185
Tumor
-0.8
1043
Tumor
-0.8
387
Tumor
-0.9
311
Tumor
-0.9
513
Tumor
-0.9
477
Tumor
-0.9
567
Tumor
-0.9
851
Tumor
-1.0
1045
Tumor
-1.0
375
Tumor
-1.0
355
Tumor
-1.1
953
Tumor
-1.1
343
Tumor
-1.1
491
Tumor
-1.1
967
Tumor
-1.1
313
Tumor
-1.1
647
Tumor
-1.2
285
Tumor
-1.2
383
Tumor
-1.2
957
Tumor
-1.3
363
Tumor
-1.3
533
Tumor
-1.3
535
Tumor
-1.4
1013
Tumor
-1.5
661
Tumor
-1.5
724
Normal
-1.7
283
Tumor
-2.1
211
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
