We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB20 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
182.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
148.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
110.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
107.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
83.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
62.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
60.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
54.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB20 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
156.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
109.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
98.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
76.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
75.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
50.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.6
498
Normal
0.7
697
Tumor
0.6
926
Normal
0.6
494
Normal
0.6
526
Normal
0.6
113
Tumor
0.6
514
Normal
0.6
713
Tumor
0.5
491
Tumor
0.5
813
Tumor
0.5
488
Normal
0.5
696
Normal
0.5
434
Normal
0.5
447
Tumor
0.5
778
Normal
0.5
1026
Normal
0.5
332
Normal
0.5
456
Normal
0.5
422
Normal
0.4
482
Normal
0.4
261
Tumor
0.4
917
Tumor
0.4
918
Normal
0.4
546
Normal
0.4
262
Normal
0.4
415
Tumor
0.4
124
Normal
0.4
195
Tumor
0.4
368
Normal
0.4
142
Normal
0.4
955
Tumor
0.4
916
Normal
0.4
952
Normal
0.4
1028
Normal
0.4
492
Normal
0.4
922
Normal
0.4
392
Normal
0.4
212
Normal
0.4
518
Normal
0.4
878
Normal
0.4
686
Normal
0.4
467
Tumor
0.4
981
Tumor
0.4
756
Normal
0.4
528
Normal
0.4
478
Normal
0.4
616
Normal
0.4
232
Normal
0.4
314
Normal
0.4
484
Normal
0.4
914
Normal
0.4
356
Normal
0.3
257
Tumor
0.3
446
Normal
0.3
272
Normal
0.3
286
Normal
0.3
816
Normal
0.3
474
Normal
0.3
968
Normal
0.3
424
Normal
0.3
524
Normal
0.3
268
Normal
0.3
924
Normal
0.3
298
Normal
0.3
863
Tumor
0.3
1044
Normal
0.3
284
Normal
0.3
344
Normal
0.3
722
Normal
0.3
364
Normal
0.3
628
Normal
0.3
218
Normal
0.3
636
Normal
0.3
721
Tumor
0.3
375
Tumor
0.3
111
Normal
0.3
862
Normal
0.3
662
Normal
0.3
966
Normal
0.3
125
Tumor
0.3
944
Normal
0.3
714
Normal
0.3
786
Normal
0.3
376
Normal
0.3
114
Normal
0.3
716
Normal
0.3
715
Tumor
0.3
954
Normal
0.3
481
Tumor
0.3
352
Normal
0.3
866
Normal
0.3
984
Normal
0.3
882
Normal
0.3
1046
Normal
0.3
953
Tumor
0.3
536
Normal
0.3
138
Normal
0.3
824
Normal
0.3
396
Normal
0.3
1022
Normal
0.3
466
Normal
0.3
1015
Tumor
0.3
852
Normal
0.2
358
Normal
0.2
412
Normal
0.2
146
Normal
0.2
366
Normal
0.2
414
Normal
0.2
912
Normal
0.2
278
Normal
0.2
572
Normal
0.2
228
Normal
0.2
451
Tumor
0.2
145
Tumor
0.2
746
Normal
0.2
416
Normal
0.2
426
Normal
0.2
362
Normal
0.2
642
Normal
0.2
567
Tumor
0.2
1014
Normal
0.2
564
Normal
0.2
538
Normal
0.2
224
Normal
0.2
311
Tumor
0.2
873
Tumor
0.2
468
Normal
0.2
956
Normal
0.2
568
Normal
0.2
744
Normal
0.2
864
Normal
0.2
312
Normal
0.2
978
Normal
0.2
755
Tumor
0.2
258
Normal
0.2
497
Tumor
0.2
448
Normal
0.2
574
Normal
0.2
436
Normal
0.2
1016
Normal
0.2
128
Normal
0.2
618
Normal
0.2
1042
Normal
0.2
728
Normal
0.2
271
Tumor
0.2
558
Normal
0.2
462
Normal
0.2
814
Normal
0.2
444
Normal
0.2
342
Normal
0.2
353
Tumor
0.2
868
Normal
0.2
472
Normal
0.1
874
Normal
0.1
132
Normal
0.1
432
Normal
0.1
858
Normal
0.1
698
Normal
0.1
943
Tumor
0.1
464
Normal
0.1
516
Normal
0.1
126
Normal
0.1
857
Tumor
0.1
328
Normal
0.1
964
Normal
0.1
553
Tumor
0.1
573
Tumor
0.1
452
Normal
0.1
672
Normal
0.1
884
Normal
0.1
188
Normal
0.1
664
Normal
0.1
214
Normal
0.1
661
Tumor
0.1
327
Tumor
0.1
663
Tumor
0.1
136
Normal
0.1
851
Tumor
0.1
554
Normal
0.1
433
Tumor
0.1
534
Normal
0.1
913
Tumor
0.0
187
Tumor
0.0
393
Tumor
0.0
493
Tumor
0.0
386
Normal
0.0
923
Tumor
0.0
211
Tumor
0.0
523
Tumor
0.0
557
Tumor
0.0
938
Normal
0.0
958
Normal
0.0
666
Normal
0.0
818
Normal
0.0
738
Normal
0.0
648
Normal
0.0
976
Normal
0.0
355
Tumor
0.0
915
Tumor
0.0
982
Normal
0.0
395
Tumor
0.0
817
Tumor
0.0
525
Tumor
0.0
867
Tumor
0.0
724
Normal
0.0
148
Normal
0.0
617
Tumor
0.0
217
Tumor
0.0
615
Tumor
0.0
428
Normal
0.0
162
Normal
0.0
545
Tumor
0.0
823
Tumor
-0.1
196
Normal
-0.1
427
Tumor
-0.1
461
Tumor
-0.1
861
Tumor
-0.1
354
Normal
-0.1
975
Tumor
-0.1
172
Normal
-0.1
385
Tumor
-0.1
394
Normal
-0.1
186
Normal
-0.1
1032
Normal
-0.1
742
Normal
-0.1
297
Tumor
-0.1
222
Normal
-0.1
957
Tumor
-0.1
391
Tumor
-0.1
1031
Tumor
-0.1
191
Tumor
-0.1
267
Tumor
-0.1
1027
Tumor
-0.1
627
Tumor
-0.1
423
Tumor
-0.2
785
Tumor
-0.2
723
Tumor
-0.2
421
Tumor
-0.2
411
Tumor
-0.2
383
Tumor
-0.2
925
Tumor
-0.2
137
Tumor
-0.2
737
Tumor
-0.2
192
Normal
-0.2
131
Tumor
-0.2
277
Tumor
-0.2
513
Tumor
-0.2
571
Tumor
-0.2
365
Tumor
-0.2
313
Tumor
-0.2
127
Tumor
-0.2
388
Normal
-0.2
471
Tumor
-0.2
1021
Tumor
-0.2
685
Tumor
-0.2
343
Tumor
-0.2
231
Tumor
-0.2
537
Tumor
-0.3
641
Tumor
-0.3
213
Tumor
-0.3
951
Tumor
-0.3
141
Tumor
-0.3
483
Tumor
-0.3
455
Tumor
-0.3
865
Tumor
-0.3
883
Tumor
-0.3
363
Tumor
-0.3
515
Tumor
-0.3
695
Tumor
-0.3
937
Tumor
-0.3
361
Tumor
-0.3
384
Normal
-0.3
563
Tumor
-0.3
921
Tumor
-0.3
881
Tumor
-0.3
223
Tumor
-0.3
741
Tumor
-0.3
535
Tumor
-0.3
443
Tumor
-0.3
185
Tumor
-0.4
161
Tumor
-0.4
527
Tumor
-0.4
963
Tumor
-0.4
1045
Tumor
-0.4
671
Tumor
-0.4
1043
Tumor
-0.4
387
Tumor
-0.4
877
Tumor
-0.4
445
Tumor
-0.4
1025
Tumor
-0.5
331
Tumor
-0.5
221
Tumor
-0.5
367
Tumor
-0.5
112
Tumor
-0.5
635
Tumor
-0.5
487
Tumor
-0.5
533
Tumor
-0.5
911
Tumor
-0.6
665
Tumor
-0.6
283
Tumor
-0.6
357
Tumor
-0.6
983
Tumor
-0.6
413
Tumor
-0.6
147
Tumor
-0.6
341
Tumor
-0.6
227
Tumor
-0.7
465
Tumor
-0.7
477
Tumor
-0.7
1013
Tumor
-0.7
123
Tumor
-0.7
745
Tumor
-0.8
517
Tumor
-0.8
815
Tumor
-0.8
743
Tumor
-0.8
967
Tumor
-0.9
965
Tumor
-0.9
463
Tumor
-0.9
431
Tumor
-0.9
1041
Tumor
-0.9
285
Tumor
-0.9
435
Tumor
-1.0
425
Tumor
-1.0
351
Tumor
-1.0
727
Tumor
-1.0
171
Tumor
-1.0
647
Tumor
-1.0
977
Tumor
-1.0
777
Tumor
-1.1
473
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
