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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMBIM6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
512.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1676.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1643.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1440.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1214.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1155.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1135.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1120.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1117.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1107.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1103.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1083.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1073.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1072.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1067.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1030.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
974.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
964.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
937.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
935.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
922.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
922.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
907.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
899.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
883.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
876.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
864.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
838.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
833.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
821.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
821.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
818.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
816.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
788.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
781.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
780.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
777.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
775.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
772.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
765.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
753.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
751.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
748.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
746.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
746.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
744.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
743.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
741.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
738.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
725.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
725.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
716.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
712.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
710.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
710.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
704.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
698.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
696.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
695.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
694.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
693.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
692.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
689.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
688.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
684.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
680.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
679.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
679.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
678.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
674.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
673.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
672.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
668.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
667.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
664.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
663.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
662.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
660.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
660.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
654.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
652.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
651.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
648.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
648.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
640.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
635.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
634.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
633.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
630.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
628.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
624.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
624.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
623.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
623.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
623.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
623.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
622.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
620.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
619.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
617.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
616.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
616.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
614.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
613.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
611.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
609.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
606.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
606.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
601.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
601.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
592.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
589.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
588.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
586.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
583.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
580.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
575.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
575.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
575.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
574.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
570.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
569.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
567.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
566.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
565.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
563.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
559.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
559.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
558.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
554.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
553.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
551.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
546.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
544.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
539.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
539.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
536.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
535.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
535.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
534.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
534.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
533.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
533.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
533.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
533.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
532.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
529.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
528.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
527.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
526.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
526.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
524.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
523.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
523.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
521.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
520.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
519.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
517.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
516.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
516.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
515.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
513.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
512.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
510.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
510.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
506.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
506.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
503.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
502.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
500.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
500.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
495.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
494.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
493.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
493.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
492.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
491.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
487.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
487.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
485.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
485.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
484.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
478.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
477.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
475.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
475.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
471.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
471.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
471.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
469.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
469.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
465.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
465.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
465.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
462.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
462.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
460.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
460.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
457.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
457.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
456.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
453.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
452.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
452.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
452.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
451.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
451.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
448.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
448.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
447.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
447.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
446.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
446.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
445.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
445.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
445.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
444.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
443.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
442.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
441.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
440.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
437.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
437.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
433.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
430.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
429.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
429.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
428.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
428.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
425.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
425.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
424.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
424.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
421.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
418.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
416.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
416.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
415.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
415.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
413.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
413.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
412.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
410.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
409.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
407.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
403.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
401.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
401.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
399.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
399.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
397.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
396.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
394.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
390.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
389.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
387.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
386.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
385.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
383.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
381.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
381.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
379.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
375.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
374.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
371.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
370.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
370.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
366.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
365.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
362.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
362.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
359.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
358.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
356.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
354.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
353.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
352.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
350.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
348.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
346.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
340.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
338.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
337.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
337.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
336.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
333.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
330.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
329.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
324.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
321.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
320.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
319.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
318.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
318.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
315.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
315.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
313.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
310.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
307.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
304.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
298.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
294.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
291.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
290.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
284.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
283.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
283.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
283.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
282.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
282.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
279.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
276.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
275.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
275.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
275.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
274.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
271.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
266.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
263.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
262.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
260.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
259.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
259.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
258.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
257.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
256.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
253.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
252.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
251.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
249.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
247.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
244.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
244.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
243.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
242.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
235.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
234.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
233.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
227.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
225.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
224.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
221.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
221.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
221.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
220.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
218.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
217.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
211.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
211.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
195.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
182.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
182.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
171.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
162.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
157.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
157.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
154.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
137.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
125.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
93.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
92.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
85.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMBIM6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
500.5
Number of samples
231
Samples
Sample
Description
TPM
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1213.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1166.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1073.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
1049.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
1035.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1019.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
999.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
996.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
938.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
904.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
884.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
798.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
794.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
790.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
786.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
778.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
776.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
770.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
760.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
757.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
749.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
739.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
737.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
732.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
730.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
721.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
720.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
719.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
716.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
716.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
701.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
700.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
697.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
695.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
676.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
670.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
665.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
664.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
661.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
661.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
658.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
657.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
655.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
653.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
651.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
650.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
649.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
647.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
646.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
642.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
641.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
636.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
633.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
627.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
626.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
625.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
623.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
622.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
620.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
614.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
613.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
598.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
596.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
595.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
595.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
594.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
592.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
590.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
584.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
579.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
577.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
566.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
563.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
563.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
561.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
557.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
556.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
554.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
553.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
552.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
549.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
548.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
547.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
544.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
541.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
541.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
539.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
532.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
531.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
529.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
529.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
524.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
523.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
521.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
521.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
518.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
510.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
507.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
505.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
504.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
501.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
497.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
496.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
493.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
486.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
485.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
482.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
481.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
478.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
476.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
476.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
474.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
474.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
473.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
472.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
470.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
469.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
464.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
459.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
459.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
455.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
454.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
452.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
450.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
449.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
443.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
439.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
436.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
436.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
434.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
429.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
429.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
429.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
426.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
425.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
424.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
423.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
422.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
419.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
418.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
418.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
413.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
412.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
411.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
410.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
407.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
405.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
403.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
402.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
402.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
400.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
399.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
387.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
386.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
385.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
384.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
384.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
381.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
379.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
378.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
378.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
376.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
376.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
372.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
371.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
371.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
371.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
370.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
370.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
369.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
367.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
366.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
365.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
364.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
364.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
362.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
360.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
358.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
357.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
356.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
352.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
352.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
351.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
348.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
344.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
344.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
340.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
339.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
337.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
335.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
334.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
332.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
330.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
325.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
324.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
319.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
314.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
313.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
312.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
307.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
305.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
305.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
304.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
304.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
301.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
298.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
297.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
296.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
290.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
288.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
286.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
285.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
282.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
276.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
267.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
266.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
266.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
263.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
261.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
258.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
236.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
236.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
232.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
231.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
225.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
224.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
222.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
219.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
211.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
181.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
178.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.2
955
Tumor
1.1
867
Tumor
1.1
414
Normal
1.1
426
Normal
1.1
911
Tumor
1.0
298
Normal
1.0
636
Normal
1.0
114
Normal
1.0
627
Tumor
1.0
342
Normal
1.0
376
Normal
1.0
862
Normal
1.0
954
Normal
1.0
466
Normal
0.9
428
Normal
0.9
938
Normal
0.9
468
Normal
0.9
354
Normal
0.9
127
Tumor
0.9
944
Normal
0.9
314
Normal
0.8
392
Normal
0.8
278
Normal
0.8
648
Normal
0.8
358
Normal
0.8
396
Normal
0.8
171
Tumor
0.8
111
Normal
0.8
616
Normal
0.8
332
Normal
0.8
568
Normal
0.8
388
Normal
0.8
465
Tumor
0.8
261
Tumor
0.7
136
Normal
0.7
666
Normal
0.7
148
Normal
0.7
824
Normal
0.7
172
Normal
0.7
878
Normal
0.7
462
Normal
0.7
572
Normal
0.7
344
Normal
0.7
864
Normal
0.7
433
Tumor
0.7
1046
Normal
0.7
744
Normal
0.7
564
Normal
0.7
124
Normal
0.7
563
Tumor
0.6
196
Normal
0.6
866
Normal
0.6
366
Normal
0.6
662
Normal
0.6
356
Normal
0.6
952
Normal
0.6
424
Normal
0.6
352
Normal
0.6
446
Normal
0.6
464
Normal
0.6
362
Normal
0.6
1044
Normal
0.6
432
Normal
0.6
664
Normal
0.6
628
Normal
0.6
138
Normal
0.6
915
Tumor
0.5
452
Normal
0.5
312
Normal
0.5
672
Normal
0.5
444
Normal
0.5
1028
Normal
0.5
642
Normal
0.5
514
Normal
0.5
1041
Tumor
0.5
132
Normal
0.5
1022
Normal
0.5
742
Normal
0.5
964
Normal
0.5
914
Normal
0.5
456
Normal
0.5
126
Normal
0.5
698
Normal
0.5
857
Tumor
0.5
958
Normal
0.5
574
Normal
0.5
746
Normal
0.5
956
Normal
0.5
434
Normal
0.5
786
Normal
0.5
268
Normal
0.5
422
Normal
0.5
448
Normal
0.5
516
Normal
0.5
423
Tumor
0.5
816
Normal
0.5
515
Tumor
0.5
966
Normal
0.4
186
Normal
0.4
916
Normal
0.4
272
Normal
0.4
445
Tumor
0.4
284
Normal
0.4
262
Normal
0.4
818
Normal
0.4
146
Normal
0.4
258
Normal
0.4
924
Normal
0.4
142
Normal
0.4
451
Tumor
0.4
328
Normal
0.4
123
Tumor
0.4
723
Tumor
0.4
738
Normal
0.3
943
Tumor
0.3
873
Tumor
0.3
214
Normal
0.3
976
Normal
0.3
526
Normal
0.3
912
Normal
0.3
852
Normal
0.3
488
Normal
0.3
874
Normal
0.3
882
Normal
0.3
922
Normal
0.3
518
Normal
0.3
615
Tumor
0.3
384
Normal
0.3
635
Tumor
0.3
861
Tumor
0.3
858
Normal
0.3
286
Normal
0.3
228
Normal
0.3
481
Tumor
0.3
195
Tumor
0.3
968
Normal
0.3
222
Normal
0.3
412
Normal
0.3
232
Normal
0.3
884
Normal
0.3
494
Normal
0.3
368
Normal
0.3
482
Normal
0.3
558
Normal
0.3
778
Normal
0.3
421
Tumor
0.2
546
Normal
0.2
212
Normal
0.2
112
Tumor
0.2
192
Normal
0.2
756
Normal
0.2
364
Normal
0.2
1043
Tumor
0.2
435
Tumor
0.2
1027
Tumor
0.2
696
Normal
0.2
188
Normal
0.2
413
Tumor
0.2
534
Normal
0.2
741
Tumor
0.2
618
Normal
0.2
528
Normal
0.1
557
Tumor
0.1
341
Tumor
0.1
386
Normal
0.1
1016
Normal
0.1
918
Normal
0.1
218
Normal
0.1
728
Normal
0.1
715
Tumor
0.1
231
Tumor
0.1
1045
Tumor
0.1
224
Normal
0.1
567
Tumor
0.1
267
Tumor
0.1
436
Normal
0.1
1026
Normal
0.1
641
Tumor
0.1
647
Tumor
0.1
686
Normal
0.1
162
Normal
0.1
443
Tumor
0.0
474
Normal
0.0
524
Normal
0.0
1014
Normal
0.0
745
Tumor
0.0
394
Normal
0.0
984
Normal
0.0
665
Tumor
0.0
571
Tumor
0.0
663
Tumor
0.0
982
Normal
0.0
113
Tumor
0.0
213
Tumor
0.0
823
Tumor
0.0
716
Normal
0.0
472
Normal
0.0
785
Tumor
0.0
357
Tumor
0.0
868
Normal
-0.1
427
Tumor
-0.1
714
Normal
-0.1
755
Tumor
-0.1
1042
Normal
-0.1
513
Tumor
-0.1
361
Tumor
-0.1
137
Tumor
-0.1
953
Tumor
-0.1
395
Tumor
-0.1
981
Tumor
-0.1
978
Normal
-0.1
461
Tumor
-0.1
813
Tumor
-0.1
297
Tumor
-0.1
365
Tumor
-0.1
191
Tumor
-0.1
977
Tumor
-0.1
722
Normal
-0.1
411
Tumor
-0.1
727
Tumor
-0.1
484
Normal
-0.1
353
Tumor
-0.1
217
Tumor
-0.1
975
Tumor
-0.2
145
Tumor
-0.2
431
Tumor
-0.2
883
Tumor
-0.2
447
Tumor
-0.2
185
Tumor
-0.2
1015
Tumor
-0.2
963
Tumor
-0.2
863
Tumor
-0.2
671
Tumor
-0.2
538
Normal
-0.2
1021
Tumor
-0.2
527
Tumor
-0.2
498
Normal
-0.2
493
Tumor
-0.2
492
Normal
-0.3
815
Tumor
-0.3
685
Tumor
-0.3
257
Tumor
-0.3
697
Tumor
-0.3
271
Tumor
-0.3
478
Normal
-0.3
814
Normal
-0.3
147
Tumor
-0.3
135
Tumor
-0.3
471
Tumor
-0.3
921
Tumor
-0.3
1025
Tumor
-0.3
463
Tumor
-0.3
573
Tumor
-0.3
467
Tumor
-0.3
187
Tumor
-0.4
926
Normal
-0.4
367
Tumor
-0.4
913
Tumor
-0.4
383
Tumor
-0.4
125
Tumor
-0.4
877
Tumor
-0.4
661
Tumor
-0.4
536
Normal
-0.4
1032
Normal
-0.4
881
Tumor
-0.5
923
Tumor
-0.5
141
Tumor
-0.5
221
Tumor
-0.5
327
Tumor
-0.5
917
Tumor
-0.5
355
Tumor
-0.5
737
Tumor
-0.5
965
Tumor
-0.5
363
Tumor
-0.6
416
Normal
-0.6
331
Tumor
-0.6
937
Tumor
-0.6
617
Tumor
-0.6
387
Tumor
-0.6
851
Tumor
-0.6
391
Tumor
-0.6
967
Tumor
-0.6
313
Tumor
-0.6
713
Tumor
-0.6
491
Tumor
-0.6
351
Tumor
-0.7
951
Tumor
-0.7
343
Tumor
-0.7
721
Tumor
-0.7
277
Tumor
-0.7
311
Tumor
-0.7
375
Tumor
-0.7
161
Tumor
-0.7
554
Normal
-0.8
477
Tumor
-0.8
817
Tumor
-0.8
497
Tumor
-0.8
415
Tumor
-0.8
777
Tumor
-0.8
385
Tumor
-0.8
425
Tumor
-0.9
517
Tumor
-0.9
455
Tumor
-0.9
525
Tumor
-0.9
983
Tumor
-0.9
724
Normal
-0.9
393
Tumor
-0.9
487
Tumor
-0.9
743
Tumor
-1.0
1013
Tumor
-1.0
925
Tumor
-1.0
553
Tumor
-1.0
483
Tumor
-1.1
695
Tumor
-1.1
533
Tumor
-1.1
957
Tumor
-1.1
223
Tumor
-1.2
1031
Tumor
-1.2
545
Tumor
-1.2
537
Tumor
-1.3
535
Tumor
-1.3
131
Tumor
-1.4
283
Tumor
-1.5
865
Tumor
-1.5
227
Tumor
-1.5
285
Tumor
-1.6
523
Tumor
-1.6
473
Tumor
-1.7
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.