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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
N4BP2L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
N4BP2L1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO48721
0 years, female, NA, stage:1, alive, 900 days
97.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
82.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
65.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
51.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
48.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
432
Normal
0.8
1046
Normal
0.7
356
Normal
0.7
698
Normal
0.7
368
Normal
0.7
376
Normal
0.7
672
Normal
0.7
396
Normal
0.7
464
Normal
0.7
388
Normal
0.7
912
Normal
0.6
436
Normal
0.6
984
Normal
0.6
352
Normal
0.6
342
Normal
0.6
964
Normal
0.6
884
Normal
0.6
394
Normal
0.6
128
Normal
0.6
412
Normal
0.6
1032
Normal
0.5
142
Normal
0.5
384
Normal
0.5
452
Normal
0.5
1014
Normal
0.5
358
Normal
0.5
362
Normal
0.5
1044
Normal
0.5
746
Normal
0.5
446
Normal
0.5
448
Normal
0.5
878
Normal
0.5
111
Normal
0.5
572
Normal
0.5
468
Normal
0.5
922
Normal
0.5
431
Tumor
0.5
196
Normal
0.5
416
Normal
0.5
424
Normal
0.5
186
Normal
0.5
648
Normal
0.5
786
Normal
0.5
364
Normal
0.5
714
Normal
0.4
232
Normal
0.4
344
Normal
0.4
664
Normal
0.4
914
Normal
0.4
867
Tumor
0.4
328
Normal
0.4
818
Normal
0.4
926
Normal
0.4
132
Normal
0.4
136
Normal
0.4
466
Normal
0.4
918
Normal
0.4
314
Normal
0.4
482
Normal
0.4
218
Normal
0.4
744
Normal
0.4
112
Tumor
0.4
456
Normal
0.4
696
Normal
0.4
858
Normal
0.4
434
Normal
0.4
558
Normal
0.4
414
Normal
0.4
568
Normal
0.4
366
Normal
0.4
716
Normal
0.4
138
Normal
0.4
428
Normal
0.4
662
Normal
0.4
686
Normal
0.4
146
Normal
0.4
514
Normal
0.4
354
Normal
0.4
435
Tumor
0.4
738
Normal
0.4
982
Normal
0.4
868
Normal
0.4
1022
Normal
0.4
526
Normal
0.4
214
Normal
0.4
742
Normal
0.4
516
Normal
0.4
824
Normal
0.3
978
Normal
0.3
756
Normal
0.3
938
Normal
0.3
222
Normal
0.3
1016
Normal
0.3
528
Normal
0.3
882
Normal
0.3
262
Normal
0.3
944
Normal
0.3
498
Normal
0.3
481
Tumor
0.3
426
Normal
0.3
866
Normal
0.3
1013
Tumor
0.3
873
Tumor
0.3
462
Normal
0.3
131
Tumor
0.3
564
Normal
0.3
444
Normal
0.3
392
Normal
0.3
723
Tumor
0.3
666
Normal
0.3
883
Tumor
0.3
977
Tumor
0.3
515
Tumor
0.3
924
Normal
0.3
722
Normal
0.3
172
Normal
0.3
488
Normal
0.2
484
Normal
0.2
114
Normal
0.2
534
Normal
0.2
162
Normal
0.2
721
Tumor
0.2
554
Normal
0.2
954
Normal
0.2
777
Tumor
0.2
864
Normal
0.2
258
Normal
0.2
952
Normal
0.2
272
Normal
0.2
422
Normal
0.2
472
Normal
0.2
863
Tumor
0.2
478
Normal
0.2
423
Tumor
0.2
636
Normal
0.2
298
Normal
0.2
958
Normal
0.2
332
Normal
0.2
113
Tumor
0.2
212
Normal
0.2
874
Normal
0.2
415
Tumor
0.2
524
Normal
0.2
968
Normal
0.2
1042
Normal
0.2
353
Tumor
0.2
211
Tumor
0.2
695
Tumor
0.2
518
Normal
0.2
1026
Normal
0.2
386
Normal
0.2
778
Normal
0.2
546
Normal
0.1
616
Normal
0.1
284
Normal
0.1
966
Normal
0.1
955
Tumor
0.1
1028
Normal
0.1
728
Normal
0.1
343
Tumor
0.1
147
Tumor
0.1
494
Normal
0.1
862
Normal
0.1
124
Normal
0.1
135
Tumor
0.1
474
Normal
0.1
628
Normal
0.1
492
Normal
0.1
473
Tumor
0.1
278
Normal
0.1
976
Normal
0.1
357
Tumor
0.1
557
Tumor
0.1
217
Tumor
0.1
148
Normal
0.1
224
Normal
0.1
268
Normal
0.1
574
Normal
0.1
963
Tumor
0.0
916
Normal
0.0
141
Tumor
0.0
286
Normal
0.0
743
Tumor
0.0
365
Tumor
0.0
361
Tumor
0.0
1031
Tumor
0.0
642
Normal
0.0
465
Tumor
0.0
312
Normal
0.0
261
Tumor
0.0
313
Tumor
0.0
171
Tumor
0.0
187
Tumor
0.0
297
Tumor
0.0
915
Tumor
0.0
1045
Tumor
0.0
1041
Tumor
0.0
192
Normal
0.0
411
Tumor
0.0
956
Normal
0.0
271
Tumor
0.0
443
Tumor
0.0
1025
Tumor
0.0
447
Tumor
0.0
661
Tumor
0.0
327
Tumor
-0.1
727
Tumor
-0.1
461
Tumor
-0.1
923
Tumor
-0.1
538
Normal
-0.1
563
Tumor
-0.1
355
Tumor
-0.1
852
Normal
-0.1
536
Normal
-0.1
517
Tumor
-0.1
161
Tumor
-0.1
665
Tumor
-0.1
641
Tumor
-0.1
126
Normal
-0.1
713
Tumor
-0.1
816
Normal
-0.1
433
Tumor
-0.1
425
Tumor
-0.1
618
Normal
-0.1
228
Normal
-0.1
137
Tumor
-0.1
277
Tumor
-0.2
663
Tumor
-0.2
911
Tumor
-0.2
145
Tumor
-0.2
1043
Tumor
-0.2
981
Tumor
-0.2
877
Tumor
-0.2
861
Tumor
-0.2
715
Tumor
-0.2
755
Tumor
-0.2
571
Tumor
-0.2
487
Tumor
-0.2
221
Tumor
-0.2
647
Tumor
-0.2
227
Tumor
-0.2
513
Tumor
-0.2
341
Tumor
-0.2
627
Tumor
-0.2
671
Tumor
-0.2
741
Tumor
-0.3
421
Tumor
-0.3
375
Tumor
-0.3
913
Tumor
-0.3
383
Tumor
-0.3
921
Tumor
-0.3
125
Tumor
-0.3
451
Tumor
-0.3
188
Normal
-0.3
231
Tumor
-0.3
363
Tumor
-0.3
393
Tumor
-0.4
127
Tumor
-0.4
185
Tumor
-0.4
351
Tumor
-0.4
857
Tumor
-0.4
267
Tumor
-0.4
635
Tumor
-0.4
535
Tumor
-0.4
213
Tumor
-0.4
331
Tumor
-0.4
257
Tumor
-0.4
477
Tumor
-0.4
391
Tumor
-0.4
445
Tumor
-0.4
1027
Tumor
-0.4
1021
Tumor
-0.4
573
Tumor
-0.4
195
Tumor
-0.4
865
Tumor
-0.4
724
Normal
-0.4
483
Tumor
-0.5
471
Tumor
-0.5
395
Tumor
-0.5
463
Tumor
-0.5
967
Tumor
-0.5
925
Tumor
-0.5
615
Tumor
-0.5
823
Tumor
-0.5
951
Tumor
-0.5
943
Tumor
-0.5
785
Tumor
-0.5
467
Tumor
-0.6
385
Tumor
-0.6
1015
Tumor
-0.6
737
Tumor
-0.6
553
Tumor
-0.6
491
Tumor
-0.6
814
Normal
-0.6
191
Tumor
-0.6
917
Tumor
-0.6
367
Tumor
-0.6
123
Tumor
-0.6
525
Tumor
-0.6
387
Tumor
-0.6
617
Tumor
-0.6
493
Tumor
-0.6
413
Tumor
-0.7
817
Tumor
-0.7
523
Tumor
-0.7
957
Tumor
-0.7
881
Tumor
-0.7
455
Tumor
-0.7
427
Tumor
-0.7
815
Tumor
-0.8
533
Tumor
-0.8
685
Tumor
-0.8
311
Tumor
-0.8
497
Tumor
-0.8
953
Tumor
-0.8
697
Tumor
-0.8
813
Tumor
-0.8
965
Tumor
-0.8
567
Tumor
-0.8
545
Tumor
-0.8
975
Tumor
-0.8
983
Tumor
-0.9
537
Tumor
-0.9
937
Tumor
-0.9
851
Tumor
-0.9
527
Tumor
-1.0
285
Tumor
-1.1
223
Tumor
-1.2
745
Tumor
-1.2
283
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
