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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NABP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
80.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
49.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
865
Tumor
1.2
411
Tumor
1.2
427
Tumor
1.1
743
Tumor
1.1
355
Tumor
1.1
497
Tumor
1.0
545
Tumor
1.0
953
Tumor
1.0
943
Tumor
1.0
647
Tumor
1.0
937
Tumor
0.9
877
Tumor
0.9
211
Tumor
0.9
488
Normal
0.9
957
Tumor
0.8
951
Tumor
0.8
523
Tumor
0.8
473
Tumor
0.8
483
Tumor
0.8
685
Tumor
0.8
1021
Tumor
0.8
983
Tumor
0.8
515
Tumor
0.8
484
Normal
0.8
917
Tumor
0.8
487
Tumor
0.7
131
Tumor
0.7
1031
Tumor
0.7
663
Tumor
0.7
517
Tumor
0.7
492
Normal
0.7
1027
Tumor
0.7
277
Tumor
0.7
493
Tumor
0.7
494
Normal
0.7
777
Tumor
0.7
737
Tumor
0.7
413
Tumor
0.7
923
Tumor
0.6
447
Tumor
0.6
375
Tumor
0.6
573
Tumor
0.6
313
Tumor
0.6
227
Tumor
0.6
921
Tumor
0.6
467
Tumor
0.5
925
Tumor
0.5
1041
Tumor
0.5
965
Tumor
0.5
967
Tumor
0.5
1015
Tumor
0.5
535
Tumor
0.5
977
Tumor
0.5
357
Tumor
0.5
471
Tumor
0.4
881
Tumor
0.4
567
Tumor
0.4
388
Normal
0.4
527
Tumor
0.4
331
Tumor
0.4
823
Tumor
0.4
351
Tumor
0.4
461
Tumor
0.4
327
Tumor
0.4
873
Tumor
0.4
425
Tumor
0.4
813
Tumor
0.4
697
Tumor
0.3
394
Normal
0.3
665
Tumor
0.3
283
Tumor
0.3
498
Normal
0.3
883
Tumor
0.3
915
Tumor
0.3
695
Tumor
0.3
491
Tumor
0.3
385
Tumor
0.3
396
Normal
0.3
671
Tumor
0.3
223
Tumor
0.3
525
Tumor
0.3
641
Tumor
0.3
715
Tumor
0.3
383
Tumor
0.3
815
Tumor
0.3
423
Tumor
0.2
817
Tumor
0.2
135
Tumor
0.2
533
Tumor
0.2
721
Tumor
0.2
727
Tumor
0.2
395
Tumor
0.2
1043
Tumor
0.2
724
Normal
0.2
862
Normal
0.2
916
Normal
0.2
553
Tumor
0.2
537
Tumor
0.2
465
Tumor
0.2
851
Tumor
0.2
455
Tumor
0.2
137
Tumor
0.2
661
Tumor
0.2
297
Tumor
0.2
431
Tumor
0.1
141
Tumor
0.1
161
Tumor
0.1
814
Normal
0.1
257
Tumor
0.1
571
Tumor
0.1
146
Normal
0.1
392
Normal
0.1
878
Normal
0.1
285
Tumor
0.1
271
Tumor
0.1
393
Tumor
0.1
145
Tumor
0.1
311
Tumor
0.1
755
Tumor
0.1
924
Normal
0.1
975
Tumor
0.1
136
Normal
0.1
857
Tumor
0.1
415
Tumor
0.1
861
Tumor
0.1
785
Tumor
0.0
1025
Tumor
0.0
477
Tumor
0.0
386
Normal
0.0
867
Tumor
0.0
463
Tumor
0.0
536
Normal
0.0
513
Tumor
0.0
557
Tumor
0.0
913
Tumor
0.0
367
Tumor
0.0
963
Tumor
0.0
911
Tumor
0.0
964
Normal
0.0
524
Normal
0.0
267
Tumor
-0.1
713
Tumor
-0.1
191
Tumor
-0.1
481
Tumor
-0.1
363
Tumor
-0.1
938
Normal
-0.1
1022
Normal
-0.1
858
Normal
-0.1
563
Tumor
-0.1
686
Normal
-0.1
863
Tumor
-0.1
212
Normal
-0.1
138
Normal
-0.1
213
Tumor
-0.1
874
Normal
-0.1
328
Normal
-0.1
918
Normal
-0.1
778
Normal
-0.1
478
Normal
-0.1
981
Tumor
-0.1
1014
Normal
-0.1
284
Normal
-0.1
884
Normal
-0.1
958
Normal
-0.1
818
Normal
-0.1
966
Normal
-0.1
224
Normal
-0.1
852
Normal
-0.1
922
Normal
-0.1
984
Normal
-0.1
451
Tumor
-0.1
435
Tumor
-0.1
978
Normal
-0.1
824
Normal
-0.2
387
Tumor
-0.2
954
Normal
-0.2
1028
Normal
-0.2
462
Normal
-0.2
1016
Normal
-0.2
696
Normal
-0.2
365
Tumor
-0.2
444
Normal
-0.2
982
Normal
-0.2
912
Normal
-0.2
617
Tumor
-0.2
1045
Tumor
-0.2
864
Normal
-0.2
364
Normal
-0.2
412
Normal
-0.2
147
Tumor
-0.2
448
Normal
-0.2
518
Normal
-0.2
816
Normal
-0.2
882
Normal
-0.2
976
Normal
-0.2
926
Normal
-0.2
516
Normal
-0.2
554
Normal
-0.2
714
Normal
-0.3
391
Tumor
-0.3
1026
Normal
-0.3
434
Normal
-0.3
341
Tumor
-0.3
745
Tumor
-0.3
741
Tumor
-0.3
228
Normal
-0.3
452
Normal
-0.3
132
Normal
-0.3
716
Normal
-0.3
356
Normal
-0.3
615
Tumor
-0.3
1044
Normal
-0.3
944
Normal
-0.3
195
Tumor
-0.3
1042
Normal
-0.3
514
Normal
-0.3
738
Normal
-0.3
261
Tumor
-0.3
314
Normal
-0.3
217
Tumor
-0.3
482
Normal
-0.3
343
Tumor
-0.3
955
Tumor
-0.3
474
Normal
-0.3
558
Normal
-0.3
968
Normal
-0.3
312
Normal
-0.3
723
Tumor
-0.3
1032
Normal
-0.3
756
Normal
-0.3
187
Tumor
-0.3
414
Normal
-0.3
221
Tumor
-0.3
952
Normal
-0.3
424
Normal
-0.3
416
Normal
-0.4
538
Normal
-0.4
628
Normal
-0.4
445
Tumor
-0.4
526
Normal
-0.4
436
Normal
-0.4
298
Normal
-0.4
728
Normal
-0.4
746
Normal
-0.4
868
Normal
-0.4
572
Normal
-0.4
361
Tumor
-0.4
956
Normal
-0.4
468
Normal
-0.4
466
Normal
-0.4
433
Tumor
-0.4
286
Normal
-0.4
722
Normal
-0.4
742
Normal
-0.4
142
Normal
-0.4
421
Tumor
-0.4
627
Tumor
-0.4
443
Tumor
-0.4
636
Normal
-0.4
422
Normal
-0.4
662
Normal
-0.4
866
Normal
-0.4
914
Normal
-0.4
618
Normal
-0.5
384
Normal
-0.5
786
Normal
-0.5
428
Normal
-0.5
534
Normal
-0.5
1046
Normal
-0.5
546
Normal
-0.5
698
Normal
-0.5
564
Normal
-0.5
664
Normal
-0.5
278
Normal
-0.5
472
Normal
-0.5
353
Tumor
-0.5
185
Tumor
-0.5
456
Normal
-0.5
268
Normal
-0.5
635
Tumor
-0.5
376
Normal
-0.5
616
Normal
-0.5
192
Normal
-0.5
172
Normal
-0.5
162
Normal
-0.5
358
Normal
-0.5
362
Normal
-0.5
446
Normal
-0.6
332
Normal
-0.6
464
Normal
-0.6
426
Normal
-0.6
432
Normal
-0.6
344
Normal
-0.6
262
Normal
-0.6
148
Normal
-0.6
666
Normal
-0.6
352
Normal
-0.6
744
Normal
-0.6
231
Tumor
-0.6
648
Normal
-0.6
568
Normal
-0.6
188
Normal
-0.7
342
Normal
-0.7
672
Normal
-0.7
642
Normal
-0.7
528
Normal
-0.7
574
Normal
-0.7
354
Normal
-0.7
171
Tumor
-0.7
232
Normal
-0.8
186
Normal
-0.8
196
Normal
-0.8
272
Normal
-0.8
368
Normal
-0.8
214
Normal
-0.9
366
Normal
-0.9
258
Normal
-1.0
218
Normal
-1.0
222
Normal
-1.0
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
