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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
52.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.2
967
Tumor
1.0
473
Tumor
1.0
131
Tumor
0.9
815
Tumor
0.9
523
Tumor
0.8
463
Tumor
0.7
617
Tumor
0.7
385
Tumor
0.7
727
Tumor
0.7
535
Tumor
0.6
1043
Tumor
0.6
851
Tumor
0.6
737
Tumor
0.6
877
Tumor
0.5
965
Tumor
0.5
817
Tumor
0.5
537
Tumor
0.5
221
Tumor
0.5
125
Tumor
0.4
743
Tumor
0.4
363
Tumor
0.4
435
Tumor
0.4
413
Tumor
0.4
545
Tumor
0.4
267
Tumor
0.4
482
Normal
0.3
1032
Normal
0.3
661
Tumor
0.3
517
Tumor
0.3
913
Tumor
0.3
478
Normal
0.3
937
Tumor
0.3
975
Tumor
0.3
641
Tumor
0.3
553
Tumor
0.3
983
Tumor
0.3
283
Tumor
0.3
921
Tumor
0.3
223
Tumor
0.3
966
Normal
0.3
447
Tumor
0.3
277
Tumor
0.3
573
Tumor
0.3
141
Tumor
0.3
487
Tumor
0.3
568
Normal
0.3
481
Tumor
0.3
964
Normal
0.2
1027
Tumor
0.2
484
Normal
0.2
862
Normal
0.2
572
Normal
0.2
881
Tumor
0.2
518
Normal
0.2
671
Tumor
0.2
331
Tumor
0.2
186
Normal
0.2
462
Normal
0.2
824
Normal
0.2
925
Tumor
0.2
723
Tumor
0.2
738
Normal
0.2
976
Normal
0.2
1025
Tumor
0.2
187
Tumor
0.2
135
Tumor
0.2
574
Normal
0.2
472
Normal
0.2
376
Normal
0.2
137
Tumor
0.2
411
Tumor
0.2
474
Normal
0.2
696
Normal
0.2
558
Normal
0.2
813
Tumor
0.2
1046
Normal
0.2
865
Tumor
0.2
513
Tumor
0.1
212
Normal
0.1
564
Normal
0.1
745
Tumor
0.1
497
Tumor
0.1
546
Normal
0.1
367
Tumor
0.1
818
Normal
0.1
722
Normal
0.1
534
Normal
0.1
1041
Tumor
0.1
698
Normal
0.1
1031
Tumor
0.1
514
Normal
0.1
567
Tumor
0.1
526
Normal
0.1
852
Normal
0.1
145
Tumor
0.1
714
Normal
0.1
864
Normal
0.1
136
Normal
0.1
391
Tumor
0.1
742
Normal
0.1
1022
Normal
0.1
286
Normal
0.1
412
Normal
0.1
1021
Tumor
0.1
917
Tumor
0.1
211
Tumor
0.1
227
Tumor
0.1
816
Normal
0.1
914
Normal
0.1
124
Normal
0.1
271
Tumor
0.1
217
Tumor
0.1
557
Tumor
0.1
554
Normal
0.1
494
Normal
0.1
172
Normal
0.1
874
Normal
0.1
981
Tumor
0.1
452
Normal
0.1
492
Normal
0.1
857
Tumor
0.1
911
Tumor
0.1
195
Tumor
0.1
356
Normal
0.1
571
Tumor
0.1
416
Normal
0.1
724
Normal
0.1
464
Normal
0.1
982
Normal
0.0
721
Tumor
0.0
142
Normal
0.0
1016
Normal
0.0
1014
Normal
0.0
162
Normal
0.0
297
Tumor
0.0
868
Normal
0.0
922
Normal
0.0
926
Normal
0.0
448
Normal
0.0
861
Tumor
0.0
528
Normal
0.0
536
Normal
0.0
863
Tumor
0.0
695
Tumor
0.0
915
Tumor
0.0
616
Normal
0.0
414
Normal
0.0
713
Tumor
0.0
873
Tumor
0.0
538
Normal
0.0
746
Normal
0.0
1028
Normal
0.0
744
Normal
0.0
1042
Normal
0.0
222
Normal
0.0
938
Normal
0.0
488
Normal
0.0
715
Tumor
0.0
1026
Normal
0.0
923
Tumor
0.0
636
Normal
0.0
392
Normal
0.0
944
Normal
0.0
943
Tumor
0.0
615
Tumor
0.0
878
Normal
0.0
228
Normal
0.0
456
Normal
0.0
756
Normal
0.0
968
Normal
0.0
351
Tumor
0.0
388
Normal
0.0
188
Normal
0.0
328
Normal
0.0
785
Tumor
0.0
918
Normal
0.0
311
Tumor
0.0
387
Tumor
0.0
686
Normal
0.0
493
Tumor
0.0
232
Normal
0.0
866
Normal
0.0
527
Tumor
0.0
755
Tumor
0.0
963
Tumor
0.0
882
Normal
0.0
138
Normal
0.0
466
Normal
0.0
262
Normal
0.0
958
Normal
0.0
924
Normal
0.0
132
Normal
0.0
563
Tumor
0.0
883
Tumor
0.0
533
Tumor
-0.1
786
Normal
-0.1
261
Tumor
-0.1
778
Normal
-0.1
491
Tumor
-0.1
258
Normal
-0.1
516
Normal
-0.1
272
Normal
-0.1
424
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
366
Normal
-0.1
461
Tumor
-0.1
954
Normal
-0.1
468
Normal
-0.1
728
Normal
-0.1
665
Tumor
-0.1
618
Normal
-0.1
368
Normal
-0.1
126
Normal
-0.1
956
Normal
-0.1
1045
Tumor
-0.1
364
Normal
-0.1
952
Normal
-0.1
146
Normal
-0.1
196
Normal
-0.1
777
Tumor
-0.1
148
Normal
-0.1
434
Normal
-0.1
455
Tumor
-0.1
498
Normal
-0.1
112
Tumor
-0.1
111
Normal
-0.1
114
Normal
-0.1
953
Tumor
-0.1
977
Tumor
-0.1
171
Tumor
-0.1
663
Tumor
-0.1
394
Normal
-0.1
362
Normal
-0.1
955
Tumor
-0.1
384
Normal
-0.1
422
Normal
-0.1
436
Normal
-0.1
185
Tumor
-0.1
951
Tumor
-0.1
467
Tumor
-0.1
524
Normal
-0.1
214
Normal
-0.1
978
Normal
-0.1
128
Normal
-0.1
635
Tumor
-0.1
224
Normal
-0.2
648
Normal
-0.2
365
Tumor
-0.2
1015
Tumor
-0.2
884
Normal
-0.2
858
Normal
-0.2
515
Tumor
-0.2
284
Normal
-0.2
471
Tumor
-0.2
161
Tumor
-0.2
628
Normal
-0.2
298
Normal
-0.2
127
Tumor
-0.2
355
Tumor
-0.2
1044
Normal
-0.2
396
Normal
-0.2
465
Tumor
-0.2
451
Tumor
-0.2
642
Normal
-0.2
627
Tumor
-0.2
741
Tumor
-0.2
428
Normal
-0.2
147
Tumor
-0.2
191
Tumor
-0.2
113
Tumor
-0.2
1013
Tumor
-0.2
685
Tumor
-0.2
916
Normal
-0.2
218
Normal
-0.2
278
Normal
-0.2
421
Tumor
-0.2
867
Tumor
-0.2
664
Normal
-0.2
814
Normal
-0.2
231
Tumor
-0.2
672
Normal
-0.3
477
Tumor
-0.3
415
Tumor
-0.3
662
Normal
-0.3
647
Tumor
-0.3
912
Normal
-0.3
823
Tumor
-0.3
433
Tumor
-0.3
192
Normal
-0.3
386
Normal
-0.3
342
Normal
-0.3
697
Tumor
-0.3
268
Normal
-0.3
431
Tumor
-0.3
426
Normal
-0.3
666
Normal
-0.3
312
Normal
-0.3
314
Normal
-0.3
425
Tumor
-0.3
525
Tumor
-0.4
393
Tumor
-0.4
332
Normal
-0.4
327
Tumor
-0.4
444
Normal
-0.4
123
Tumor
-0.4
483
Tumor
-0.4
395
Tumor
-0.4
352
Normal
-0.4
427
Tumor
-0.4
375
Tumor
-0.4
213
Tumor
-0.4
344
Normal
-0.4
313
Tumor
-0.4
361
Tumor
-0.4
446
Normal
-0.4
957
Tumor
-0.5
423
Tumor
-0.5
357
Tumor
-0.5
383
Tumor
-0.5
353
Tumor
-0.5
432
Normal
-0.6
358
Normal
-0.6
445
Tumor
-0.6
354
Normal
-0.6
341
Tumor
-0.6
443
Tumor
-0.7
257
Tumor
-0.8
343
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
