We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC46A3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
65.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
63.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
62.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
61.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
50.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
45.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC46A3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
145.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
81.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
61.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
54.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
52.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
51.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
48.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
46.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
45.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
44.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
42.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
40.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
615
Tumor
2.2
515
Tumor
1.7
955
Tumor
1.5
365
Tumor
1.5
627
Tumor
1.3
136
Normal
1.1
616
Normal
1.0
514
Normal
1.0
964
Normal
1.0
494
Normal
0.9
728
Normal
0.9
356
Normal
0.9
618
Normal
0.9
257
Tumor
0.9
428
Normal
0.9
938
Normal
0.9
554
Normal
0.9
526
Normal
0.9
111
Normal
0.9
952
Normal
0.9
423
Tumor
0.8
926
Normal
0.8
436
Normal
0.8
648
Normal
0.8
432
Normal
0.8
672
Normal
0.8
968
Normal
0.8
742
Normal
0.8
162
Normal
0.8
114
Normal
0.8
723
Tumor
0.7
376
Normal
0.7
953
Tumor
0.7
1027
Tumor
0.7
518
Normal
0.7
744
Normal
0.7
918
Normal
0.7
666
Normal
0.7
462
Normal
0.7
738
Normal
0.7
451
Tumor
0.7
148
Normal
0.7
874
Normal
0.7
412
Normal
0.7
642
Normal
0.7
978
Normal
0.7
424
Normal
0.6
574
Normal
0.6
914
Normal
0.6
328
Normal
0.6
981
Tumor
0.6
132
Normal
0.6
464
Normal
0.6
664
Normal
0.6
484
Normal
0.6
1016
Normal
0.6
461
Tumor
0.5
422
Normal
0.5
488
Normal
0.5
976
Normal
0.5
824
Normal
0.5
312
Normal
0.5
362
Normal
0.5
364
Normal
0.5
147
Tumor
0.5
482
Normal
0.5
1014
Normal
0.5
956
Normal
0.5
954
Normal
0.5
212
Normal
0.5
366
Normal
0.5
128
Normal
0.5
466
Normal
0.5
172
Normal
0.5
534
Normal
0.5
258
Normal
0.5
564
Normal
0.5
388
Normal
0.5
222
Normal
0.5
528
Normal
0.5
1022
Normal
0.5
446
Normal
0.5
188
Normal
0.5
722
Normal
0.5
481
Tumor
0.4
492
Normal
0.4
816
Normal
0.4
662
Normal
0.4
456
Normal
0.4
866
Normal
0.4
414
Normal
0.4
393
Tumor
0.4
426
Normal
0.4
958
Normal
0.4
314
Normal
0.4
746
Normal
0.4
786
Normal
0.4
628
Normal
0.4
1046
Normal
0.4
858
Normal
0.4
396
Normal
0.4
416
Normal
0.4
448
Normal
0.4
124
Normal
0.4
864
Normal
0.4
546
Normal
0.4
777
Tumor
0.4
916
Normal
0.4
1013
Tumor
0.4
868
Normal
0.4
452
Normal
0.3
126
Normal
0.3
944
Normal
0.3
272
Normal
0.3
862
Normal
0.3
444
Normal
0.3
982
Normal
0.3
286
Normal
0.3
262
Normal
0.3
196
Normal
0.3
878
Normal
0.3
268
Normal
0.3
636
Normal
0.3
434
Normal
0.3
922
Normal
0.3
1042
Normal
0.3
146
Normal
0.2
358
Normal
0.2
882
Normal
0.2
818
Normal
0.2
142
Normal
0.2
361
Tumor
0.2
714
Normal
0.2
966
Normal
0.2
186
Normal
0.2
228
Normal
0.2
924
Normal
0.2
884
Normal
0.2
353
Tumor
0.2
224
Normal
0.2
354
Normal
0.2
298
Normal
0.2
232
Normal
0.2
516
Normal
0.2
342
Normal
0.2
1026
Normal
0.2
386
Normal
0.2
218
Normal
0.2
863
Tumor
0.2
568
Normal
0.1
716
Normal
0.1
698
Normal
0.1
984
Normal
0.1
415
Tumor
0.1
911
Tumor
0.1
191
Tumor
0.1
332
Normal
0.1
572
Normal
0.1
745
Tumor
0.1
474
Normal
0.1
384
Normal
0.1
284
Normal
0.1
1032
Normal
0.1
394
Normal
0.1
392
Normal
0.1
344
Normal
0.1
278
Normal
0.0
368
Normal
0.0
686
Normal
0.0
1028
Normal
0.0
785
Tumor
0.0
912
Normal
0.0
468
Normal
0.0
558
Normal
0.0
261
Tumor
0.0
138
Normal
0.0
472
Normal
0.0
192
Normal
0.0
755
Tumor
0.0
524
Normal
0.0
214
Normal
0.0
756
Normal
0.0
145
Tumor
0.0
498
Normal
0.0
513
Tumor
-0.1
1044
Normal
-0.1
491
Tumor
-0.1
137
Tumor
-0.1
915
Tumor
-0.1
352
Normal
-0.1
141
Tumor
-0.1
1015
Tumor
-0.1
327
Tumor
-0.1
161
Tumor
-0.1
867
Tumor
-0.2
873
Tumor
-0.2
852
Normal
-0.2
1041
Tumor
-0.2
696
Normal
-0.2
778
Normal
-0.2
721
Tumor
-0.2
113
Tumor
-0.2
538
Normal
-0.3
814
Normal
-0.3
357
Tumor
-0.3
187
Tumor
-0.3
217
Tumor
-0.4
311
Tumor
-0.4
195
Tumor
-0.4
663
Tumor
-0.4
421
Tumor
-0.4
478
Normal
-0.4
943
Tumor
-0.4
857
Tumor
-0.4
977
Tumor
-0.4
433
Tumor
-0.4
536
Normal
-0.5
861
Tumor
-0.5
1045
Tumor
-0.5
363
Tumor
-0.5
267
Tumor
-0.5
913
Tumor
-0.5
635
Tumor
-0.6
741
Tumor
-0.6
313
Tumor
-0.6
713
Tumor
-0.6
665
Tumor
-0.7
957
Tumor
-0.7
343
Tumor
-0.7
427
Tumor
-0.7
395
Tumor
-0.7
465
Tumor
-0.7
127
Tumor
-0.7
391
Tumor
-0.7
477
Tumor
-0.7
227
Tumor
-0.7
563
Tumor
-0.8
213
Tumor
-0.8
917
Tumor
-0.8
223
Tumor
-0.8
277
Tumor
-0.8
865
Tumor
-0.8
983
Tumor
-0.9
297
Tumor
-0.9
411
Tumor
-0.9
963
Tumor
-0.9
813
Tumor
-0.9
923
Tumor
-0.9
823
Tumor
-0.9
185
Tumor
-0.9
171
Tumor
-0.9
445
Tumor
-1.0
527
Tumor
-1.0
647
Tumor
-1.0
125
Tumor
-1.0
557
Tumor
-1.0
283
Tumor
-1.0
135
Tumor
-1.0
231
Tumor
-1.0
447
Tumor
-1.0
375
Tumor
-1.0
431
Tumor
-1.1
493
Tumor
-1.1
355
Tumor
-1.1
817
Tumor
-1.1
533
Tumor
-1.1
571
Tumor
-1.1
525
Tumor
-1.1
523
Tumor
-1.1
112
Tumor
-1.1
567
Tumor
-1.1
467
Tumor
-1.2
815
Tumor
-1.2
483
Tumor
-1.2
221
Tumor
-1.2
487
Tumor
-1.2
123
Tumor
-1.2
211
Tumor
-1.2
413
Tumor
-1.2
387
Tumor
-1.2
851
Tumor
-1.2
341
Tumor
-1.3
435
Tumor
-1.3
685
Tumor
-1.3
881
Tumor
-1.3
351
Tumor
-1.3
883
Tumor
-1.3
965
Tumor
-1.3
331
Tumor
-1.3
455
Tumor
-1.3
271
Tumor
-1.3
285
Tumor
-1.3
473
Tumor
-1.4
471
Tumor
-1.4
671
Tumor
-1.4
383
Tumor
-1.4
715
Tumor
-1.4
463
Tumor
-1.4
385
Tumor
-1.4
975
Tumor
-1.4
617
Tumor
-1.4
724
Normal
-1.4
425
Tumor
-1.4
573
Tumor
-1.4
443
Tumor
-1.5
877
Tumor
-1.5
641
Tumor
-1.6
695
Tumor
-1.6
737
Tumor
-1.7
497
Tumor
-1.7
1021
Tumor
-1.7
553
Tumor
-1.7
697
Tumor
-1.8
661
Tumor
-1.8
1043
Tumor
-1.8
535
Tumor
-1.9
367
Tumor
-1.9
131
Tumor
-1.9
1025
Tumor
-1.9
545
Tumor
-1.9
727
Tumor
-2.0
537
Tumor
-2.0
921
Tumor
-2.0
1031
Tumor
-2.0
743
Tumor
-2.0
925
Tumor
-2.2
967
Tumor
-2.2
937
Tumor
-2.2
951
Tumor
-2.7
517
Tumor
-3.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
