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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLTP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLTP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
135.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
1.2
777
Tumor
1.0
1013
Tumor
0.7
545
Tumor
0.7
943
Tumor
0.7
851
Tumor
0.6
647
Tumor
0.6
571
Tumor
0.6
311
Tumor
0.6
663
Tumor
0.6
147
Tumor
0.6
492
Normal
0.5
425
Tumor
0.5
865
Tumor
0.5
957
Tumor
0.5
536
Normal
0.5
493
Tumor
0.5
967
Tumor
0.5
497
Tumor
0.5
463
Tumor
0.5
483
Tumor
0.4
125
Tumor
0.4
478
Normal
0.4
916
Normal
0.4
376
Normal
0.4
384
Normal
0.4
375
Tumor
0.4
368
Normal
0.4
366
Normal
0.4
538
Normal
0.4
277
Tumor
0.4
135
Tumor
0.4
953
Tumor
0.4
498
Normal
0.4
721
Tumor
0.4
395
Tumor
0.3
383
Tumor
0.3
131
Tumor
0.3
392
Normal
0.3
283
Tumor
0.3
852
Normal
0.3
445
Tumor
0.3
617
Tumor
0.3
814
Normal
0.3
524
Normal
0.3
434
Normal
0.3
343
Tumor
0.3
124
Normal
0.3
527
Tumor
0.3
857
Tumor
0.3
491
Tumor
0.3
481
Tumor
0.3
697
Tumor
0.3
362
Normal
0.3
1028
Normal
0.3
745
Tumor
0.3
567
Tumor
0.3
533
Tumor
0.3
467
Tumor
0.3
975
Tumor
0.3
823
Tumor
0.2
778
Normal
0.2
984
Normal
0.2
396
Normal
0.2
1031
Tumor
0.2
365
Tumor
0.2
494
Normal
0.2
1043
Tumor
0.2
224
Normal
0.2
386
Normal
0.2
341
Tumor
0.2
978
Normal
0.2
422
Normal
0.2
1014
Normal
0.2
966
Normal
0.2
662
Normal
0.2
523
Tumor
0.2
126
Normal
0.2
573
Tumor
0.2
455
Tumor
0.2
357
Tumor
0.2
447
Tumor
0.2
268
Normal
0.2
145
Tumor
0.2
411
Tumor
0.2
672
Normal
0.2
513
Tumor
0.2
1026
Normal
0.2
212
Normal
0.2
958
Normal
0.2
813
Tumor
0.2
313
Tumor
0.2
554
Normal
0.2
528
Normal
0.2
557
Tumor
0.2
211
Tumor
0.2
756
Normal
0.2
262
Normal
0.2
968
Normal
0.2
926
Normal
0.2
525
Tumor
0.2
924
Normal
0.2
361
Tumor
0.2
558
Normal
0.2
415
Tumor
0.1
785
Tumor
0.1
488
Normal
0.1
954
Normal
0.1
421
Tumor
0.1
462
Normal
0.1
918
Normal
0.1
257
Tumor
0.1
713
Tumor
0.1
185
Tumor
0.1
364
Normal
0.1
474
Normal
0.1
473
Tumor
0.1
976
Normal
0.1
642
Normal
0.1
413
Tumor
0.1
914
Normal
0.1
661
Tumor
0.1
518
Normal
0.1
666
Normal
0.1
664
Normal
0.1
982
Normal
0.1
535
Tumor
0.1
686
Normal
0.1
367
Tumor
0.1
297
Tumor
0.1
952
Normal
0.1
312
Normal
0.1
977
Tumor
0.1
388
Normal
0.1
572
Normal
0.1
142
Normal
0.1
956
Normal
0.1
516
Normal
0.1
444
Normal
0.1
344
Normal
0.1
412
Normal
0.1
685
Tumor
0.1
138
Normal
0.0
937
Tumor
0.0
468
Normal
0.0
223
Tumor
0.0
328
Normal
0.0
648
Normal
0.0
394
Normal
0.0
1021
Tumor
0.0
136
Normal
0.0
272
Normal
0.0
628
Normal
0.0
564
Normal
0.0
114
Normal
0.0
484
Normal
0.0
1016
Normal
0.0
471
Tumor
0.0
874
Normal
0.0
432
Normal
0.0
1044
Normal
0.0
727
Tumor
0.0
342
Normal
0.0
515
Tumor
0.0
938
Normal
0.0
878
Normal
0.0
137
Tumor
0.0
363
Tumor
0.0
563
Tumor
0.0
327
Tumor
0.0
526
Normal
0.0
824
Normal
0.0
921
Tumor
0.0
424
Normal
0.0
443
Tumor
0.0
742
Normal
0.0
461
Tumor
0.0
955
Tumor
0.0
195
Tumor
0.0
352
Normal
0.0
258
Normal
0.0
448
Normal
0.0
553
Tumor
0.0
636
Normal
0.0
298
Normal
0.0
456
Normal
0.0
1046
Normal
0.0
696
Normal
0.0
228
Normal
0.0
472
Normal
0.0
866
Normal
0.0
426
Normal
0.0
983
Tumor
0.0
387
Tumor
0.0
213
Tumor
0.0
487
Tumor
0.0
574
Normal
0.0
816
Normal
0.0
786
Normal
0.0
414
Normal
0.0
1027
Tumor
0.0
482
Normal
0.0
358
Normal
0.0
716
Normal
0.0
423
Tumor
0.0
698
Normal
0.0
922
Normal
0.0
737
Tumor
0.0
746
Normal
0.0
111
Normal
-0.1
1042
Normal
-0.1
744
Normal
-0.1
284
Normal
-0.1
261
Tumor
-0.1
271
Tumor
-0.1
923
Tumor
-0.1
332
Normal
-0.1
221
Tumor
-0.1
278
Normal
-0.1
385
Tumor
-0.1
671
Tumor
-0.1
354
Normal
-0.1
1045
Tumor
-0.1
858
Normal
-0.1
881
Tumor
-0.1
285
Tumor
-0.1
1022
Normal
-0.1
944
Normal
-0.1
192
Normal
-0.1
188
Normal
-0.1
191
Tumor
-0.1
861
Tumor
-0.1
964
Normal
-0.1
722
Normal
-0.1
416
Normal
-0.1
981
Tumor
-0.1
218
Normal
-0.1
728
Normal
-0.1
435
Tumor
-0.1
534
Normal
-0.1
331
Tumor
-0.1
1032
Normal
-0.1
514
Normal
-0.1
738
Normal
-0.1
627
Tumor
-0.1
232
Normal
-0.1
477
Tumor
-0.1
546
Normal
-0.1
817
Tumor
-0.1
616
Normal
-0.1
446
Normal
-0.1
1015
Tumor
-0.1
214
Normal
-0.1
873
Tumor
-0.1
286
Normal
-0.1
723
Tumor
-0.1
963
Tumor
-0.1
537
Tumor
-0.1
912
Normal
-0.1
864
Normal
-0.1
862
Normal
-0.1
568
Normal
-0.1
351
Tumor
-0.2
393
Tumor
-0.2
965
Tumor
-0.2
161
Tumor
-0.2
868
Normal
-0.2
615
Tumor
-0.2
618
Normal
-0.2
517
Tumor
-0.2
187
Tumor
-0.2
925
Tumor
-0.2
427
Tumor
-0.2
113
Tumor
-0.2
123
Tumor
-0.2
128
Normal
-0.2
867
Tumor
-0.2
162
Normal
-0.2
466
Normal
-0.2
428
Normal
-0.2
146
Normal
-0.2
314
Normal
-0.2
641
Tumor
-0.2
132
Normal
-0.2
755
Tumor
-0.2
818
Normal
-0.2
1025
Tumor
-0.2
714
Normal
-0.2
464
Normal
-0.2
217
Tumor
-0.2
665
Tumor
-0.2
267
Tumor
-0.2
433
Tumor
-0.2
951
Tumor
-0.2
231
Tumor
-0.2
452
Normal
-0.2
148
Normal
-0.3
196
Normal
-0.3
882
Normal
-0.3
913
Tumor
-0.3
172
Normal
-0.3
883
Tumor
-0.3
222
Normal
-0.3
353
Tumor
-0.3
186
Normal
-0.3
884
Normal
-0.3
863
Tumor
-0.3
171
Tumor
-0.3
815
Tumor
-0.3
436
Normal
-0.4
915
Tumor
-0.4
391
Tumor
-0.4
1041
Tumor
-0.4
227
Tumor
-0.4
877
Tumor
-0.4
141
Tumor
-0.4
695
Tumor
-0.4
431
Tumor
-0.4
635
Tumor
-0.4
112
Tumor
-0.4
451
Tumor
-0.4
741
Tumor
-0.5
465
Tumor
-0.5
355
Tumor
-0.5
724
Normal
-0.5
911
Tumor
-0.5
743
Tumor
-0.5
715
Tumor
-0.5
356
Normal
-0.5
127
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
