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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
3.0
186
Normal
2.6
148
Normal
2.4
162
Normal
2.2
188
Normal
2.1
172
Normal
1.9
391
Tumor
1.8
367
Tumor
1.3
877
Tumor
1.3
192
Normal
1.3
571
Tumor
1.3
222
Normal
1.2
361
Tumor
1.2
567
Tumor
1.2
351
Tumor
1.2
185
Tumor
1.0
473
Tumor
1.0
1043
Tumor
0.9
196
Normal
0.9
147
Tumor
0.9
217
Tumor
0.9
671
Tumor
0.9
884
Normal
0.8
213
Tumor
0.8
925
Tumor
0.8
427
Tumor
0.8
477
Tumor
0.8
214
Normal
0.8
743
Tumor
0.8
967
Tumor
0.8
563
Tumor
0.8
983
Tumor
0.7
425
Tumor
0.7
517
Tumor
0.7
218
Normal
0.7
123
Tumor
0.7
523
Tumor
0.7
1021
Tumor
0.7
464
Normal
0.7
864
Normal
0.6
195
Tumor
0.6
1027
Tumor
0.6
358
Normal
0.6
957
Tumor
0.6
965
Tumor
0.6
1041
Tumor
0.6
353
Tumor
0.6
1014
Normal
0.6
921
Tumor
0.5
187
Tumor
0.5
355
Tumor
0.5
865
Tumor
0.5
448
Normal
0.5
525
Tumor
0.5
535
Tumor
0.5
695
Tumor
0.5
858
Normal
0.5
497
Tumor
0.5
537
Tumor
0.5
923
Tumor
0.5
698
Normal
0.5
1045
Tumor
0.5
824
Normal
0.5
515
Tumor
0.5
113
Tumor
0.5
533
Tumor
0.5
573
Tumor
0.4
131
Tumor
0.4
866
Normal
0.4
527
Tumor
0.4
1046
Normal
0.4
944
Normal
0.4
685
Tumor
0.4
354
Normal
0.4
545
Tumor
0.4
1016
Normal
0.4
341
Tumor
0.4
862
Normal
0.4
648
Normal
0.4
1031
Tumor
0.4
975
Tumor
0.4
413
Tumor
0.4
818
Normal
0.4
817
Tumor
0.3
663
Tumor
0.3
642
Normal
0.3
223
Tumor
0.3
952
Normal
0.3
665
Tumor
0.3
482
Normal
0.3
456
Normal
0.3
342
Normal
0.3
112
Tumor
0.3
977
Tumor
0.3
557
Tumor
0.3
636
Normal
0.3
285
Tumor
0.3
976
Normal
0.3
484
Normal
0.3
513
Tumor
0.3
616
Normal
0.3
161
Tumor
0.3
635
Tumor
0.3
357
Tumor
0.3
396
Normal
0.3
126
Normal
0.3
344
Normal
0.3
127
Tumor
0.2
615
Tumor
0.2
283
Tumor
0.2
984
Normal
0.2
481
Tumor
0.2
386
Normal
0.2
191
Tumor
0.2
352
Normal
0.2
953
Tumor
0.2
912
Normal
0.2
882
Normal
0.2
221
Tumor
0.2
135
Tumor
0.2
472
Normal
0.2
964
Normal
0.2
488
Normal
0.2
951
Tumor
0.2
618
Normal
0.2
868
Normal
0.2
114
Normal
0.2
851
Tumor
0.2
666
Normal
0.2
125
Tumor
0.2
365
Tumor
0.2
938
Normal
0.2
937
Tumor
0.2
628
Normal
0.2
815
Tumor
0.1
918
Normal
0.1
498
Normal
0.1
421
Tumor
0.1
724
Normal
0.1
713
Tumor
0.1
145
Tumor
0.1
954
Normal
0.1
493
Tumor
0.1
1015
Tumor
0.1
494
Normal
0.1
852
Normal
0.1
641
Tumor
0.1
958
Normal
0.1
873
Tumor
0.1
474
Normal
0.1
982
Normal
0.1
672
Normal
0.1
491
Tumor
0.1
443
Tumor
0.1
857
Tumor
0.1
572
Normal
0.1
553
Tumor
0.1
314
Normal
0.1
1025
Tumor
0.1
447
Tumor
0.1
823
Tumor
0.1
874
Normal
0.1
111
Normal
0.1
627
Tumor
0.1
132
Normal
0.1
327
Tumor
0.0
471
Tumor
0.0
142
Normal
0.0
286
Normal
0.0
138
Normal
0.0
462
Normal
0.0
228
Normal
0.0
966
Normal
0.0
267
Tumor
0.0
863
Tumor
0.0
568
Normal
0.0
943
Tumor
0.0
124
Normal
0.0
917
Tumor
0.0
331
Tumor
0.0
564
Normal
0.0
227
Tumor
0.0
232
Normal
0.0
257
Tumor
0.0
211
Tumor
0.0
968
Normal
0.0
922
Normal
0.0
432
Normal
0.0
926
Normal
0.0
446
Normal
0.0
955
Tumor
0.0
816
Normal
0.0
536
Normal
0.0
478
Normal
0.0
146
Normal
0.0
136
Normal
0.0
284
Normal
0.0
224
Normal
0.0
376
Normal
-0.1
1032
Normal
-0.1
231
Tumor
-0.1
212
Normal
-0.1
363
Tumor
-0.1
956
Normal
-0.1
981
Tumor
-0.1
487
Tumor
-0.1
662
Normal
-0.1
468
Normal
-0.1
756
Normal
-0.1
867
Tumor
-0.1
312
Normal
-0.1
978
Normal
-0.1
343
Tumor
-0.1
617
Tumor
-0.1
433
Tumor
-0.1
924
Normal
-0.1
137
Tumor
-0.1
268
Normal
-0.1
1044
Normal
-0.1
271
Tumor
-0.1
1026
Normal
-0.1
1013
Tumor
-0.1
278
Normal
-0.1
388
Normal
-0.1
258
Normal
-0.1
574
Normal
-0.1
664
Normal
-0.2
738
Normal
-0.2
262
Normal
-0.2
411
Tumor
-0.2
913
Tumor
-0.2
534
Normal
-0.2
461
Tumor
-0.2
423
Tumor
-0.2
272
Normal
-0.2
141
Tumor
-0.2
436
Normal
-0.2
332
Normal
-0.2
911
Tumor
-0.2
697
Tumor
-0.2
715
Tumor
-0.2
261
Tumor
-0.2
914
Normal
-0.2
785
Tumor
-0.2
128
Normal
-0.2
714
Normal
-0.2
383
Tumor
-0.2
528
Normal
-0.3
786
Normal
-0.3
963
Tumor
-0.3
878
Normal
-0.3
492
Normal
-0.3
546
Normal
-0.3
1028
Normal
-0.3
434
Normal
-0.3
362
Normal
-0.3
526
Normal
-0.3
647
Tumor
-0.3
721
Tumor
-0.3
883
Tumor
-0.3
861
Tumor
-0.3
366
Normal
-0.3
722
Normal
-0.3
745
Tumor
-0.3
915
Tumor
-0.3
558
Normal
-0.3
746
Normal
-0.3
1042
Normal
-0.3
744
Normal
-0.3
387
Tumor
-0.3
524
Normal
-0.3
777
Tumor
-0.3
778
Normal
-0.3
727
Tumor
-0.3
696
Normal
-0.3
483
Tumor
-0.4
518
Normal
-0.4
916
Normal
-0.4
814
Normal
-0.4
384
Normal
-0.4
728
Normal
-0.4
516
Normal
-0.4
394
Normal
-0.4
412
Normal
-0.4
755
Tumor
-0.4
311
Tumor
-0.4
742
Normal
-0.4
716
Normal
-0.4
554
Normal
-0.4
356
Normal
-0.5
661
Tumor
-0.5
364
Normal
-0.5
444
Normal
-0.5
452
Normal
-0.5
813
Tumor
-0.5
395
Tumor
-0.5
368
Normal
-0.5
723
Tumor
-0.5
538
Normal
-0.5
686
Normal
-0.5
422
Normal
-0.5
431
Tumor
-0.5
445
Tumor
-0.5
328
Normal
-0.5
298
Normal
-0.5
428
Normal
-0.6
514
Normal
-0.6
416
Normal
-0.6
385
Tumor
-0.6
424
Normal
-0.6
414
Normal
-0.6
881
Tumor
-0.6
435
Tumor
-0.7
737
Tumor
-0.7
466
Normal
-0.7
375
Tumor
-0.7
465
Tumor
-0.7
297
Tumor
-0.7
392
Normal
-0.7
277
Tumor
-0.8
393
Tumor
-0.8
313
Tumor
-0.8
463
Tumor
-0.8
426
Normal
-0.8
415
Tumor
-1.0
455
Tumor
-1.0
741
Tumor
-1.0
467
Tumor
-1.1
451
Tumor
-1.2
1022
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
