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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUSP6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
99.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
95.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
95.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
91.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
91.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
89.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
87.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
87.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
86.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
82.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
81.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
72.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
72.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
72.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
71.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
67.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
65.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
65.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
60.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
60.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
56.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
56.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
53.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
50.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
48.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
47.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DUSP6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.7
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
303.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
172.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
137.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
131.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
117.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
97.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
96.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
89.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
88.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
84.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
81.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
80.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
78.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
77.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
75.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
74.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
73.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
72.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
68.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
68.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
67.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
67.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
66.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
66.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
66.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
65.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
58.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
55.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
53.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
52.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
52.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
50.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
44.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
42.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
3.2
815
Tumor
2.2
331
Tumor
2.0
865
Tumor
1.7
497
Tumor
1.3
413
Tumor
1.3
367
Tumor
1.3
661
Tumor
1.3
535
Tumor
1.2
391
Tumor
1.1
727
Tumor
1.0
755
Tumor
1.0
983
Tumor
1.0
554
Normal
1.0
925
Tumor
0.9
524
Normal
0.8
332
Normal
0.8
515
Tumor
0.8
314
Normal
0.8
553
Tumor
0.7
746
Normal
0.7
1045
Tumor
0.7
494
Normal
0.7
298
Normal
0.7
698
Normal
0.7
564
Normal
0.6
1025
Tumor
0.6
1041
Tumor
0.6
523
Tumor
0.6
425
Tumor
0.6
313
Tumor
0.6
528
Normal
0.6
537
Tumor
0.5
955
Tumor
0.5
568
Normal
0.5
368
Normal
0.5
745
Tumor
0.5
431
Tumor
0.5
363
Tumor
0.5
851
Tumor
0.5
913
Tumor
0.5
572
Normal
0.5
387
Tumor
0.5
574
Normal
0.5
953
Tumor
0.5
487
Tumor
0.5
567
Tumor
0.5
527
Tumor
0.5
873
Tumor
0.4
516
Normal
0.4
424
Normal
0.4
1044
Normal
0.4
558
Normal
0.4
385
Tumor
0.4
721
Tumor
0.4
278
Normal
0.4
484
Normal
0.4
492
Normal
0.4
723
Tumor
0.4
778
Normal
0.4
312
Normal
0.4
388
Normal
0.4
743
Tumor
0.4
977
Tumor
0.4
277
Tumor
0.4
394
Normal
0.4
376
Normal
0.4
464
Normal
0.4
383
Tumor
0.3
428
Normal
0.3
536
Normal
0.3
912
Normal
0.3
714
Normal
0.3
744
Normal
0.3
366
Normal
0.3
915
Tumor
0.3
384
Normal
0.3
545
Tumor
0.3
716
Normal
0.3
1027
Tumor
0.3
392
Normal
0.3
696
Normal
0.3
514
Normal
0.3
786
Normal
0.3
785
Tumor
0.3
128
Normal
0.3
1026
Normal
0.3
468
Normal
0.3
861
Tumor
0.3
534
Normal
0.3
923
Tumor
0.2
146
Normal
0.2
738
Normal
0.2
433
Tumor
0.2
1022
Normal
0.2
728
Normal
0.2
722
Normal
0.2
976
Normal
0.2
124
Normal
0.2
456
Normal
0.2
756
Normal
0.2
396
Normal
0.2
137
Tumor
0.2
1021
Tumor
0.2
1015
Tumor
0.2
1046
Normal
0.2
533
Tumor
0.2
518
Normal
0.2
426
Normal
0.2
862
Normal
0.2
1028
Normal
0.1
297
Tumor
0.1
393
Tumor
0.1
918
Normal
0.1
445
Tumor
0.1
466
Normal
0.1
422
Normal
0.1
111
Normal
0.1
924
Normal
0.1
416
Normal
0.1
816
Normal
0.1
957
Tumor
0.1
434
Normal
0.1
663
Tumor
0.1
362
Normal
0.1
1032
Normal
0.1
952
Normal
0.1
526
Normal
0.1
386
Normal
0.1
742
Normal
0.1
686
Normal
0.1
966
Normal
0.0
563
Tumor
0.0
328
Normal
0.0
864
Normal
0.0
498
Normal
0.0
142
Normal
0.0
968
Normal
0.0
817
Tumor
0.0
136
Normal
0.0
943
Tumor
0.0
467
Tumor
0.0
141
Tumor
0.0
356
Normal
0.0
546
Normal
0.0
877
Tumor
0.0
395
Tumor
0.0
883
Tumor
0.0
868
Normal
0.0
671
Tumor
0.0
967
Tumor
0.0
882
Normal
0.0
414
Normal
0.0
956
Normal
0.0
672
Normal
-0.1
1031
Tumor
-0.1
452
Normal
-0.1
127
Tumor
-0.1
126
Normal
-0.1
364
Normal
-0.1
741
Tumor
-0.1
513
Tumor
-0.1
1016
Normal
-0.1
697
Tumor
-0.1
884
Normal
-0.1
412
Normal
-0.1
517
Tumor
-0.1
1014
Normal
-0.1
114
Normal
-0.1
573
Tumor
-0.1
493
Tumor
-0.1
695
Tumor
-0.1
257
Tumor
-0.1
327
Tumor
-0.1
852
Normal
-0.1
984
Normal
-0.1
131
Tumor
-0.1
421
Tumor
-0.1
921
Tumor
-0.1
427
Tumor
-0.1
451
Tumor
-0.1
944
Normal
-0.1
1042
Normal
-0.2
446
Normal
-0.2
145
Tumor
-0.2
958
Normal
-0.2
132
Normal
-0.2
491
Tumor
-0.2
916
Normal
-0.2
135
Tumor
-0.2
964
Normal
-0.2
443
Tumor
-0.2
951
Tumor
-0.2
874
Normal
-0.2
361
Tumor
-0.2
272
Normal
-0.2
666
Normal
-0.2
365
Tumor
-0.2
818
Normal
-0.2
138
Normal
-0.2
525
Tumor
-0.2
488
Normal
-0.2
954
Normal
-0.2
965
Tumor
-0.2
978
Normal
-0.2
125
Tumor
-0.2
415
Tumor
-0.2
737
Tumor
-0.2
662
Normal
-0.2
444
Normal
-0.2
713
Tumor
-0.3
911
Tumor
-0.3
436
Normal
-0.3
423
Tumor
-0.3
858
Normal
-0.3
261
Tumor
-0.3
926
Normal
-0.3
715
Tumor
-0.3
647
Tumor
-0.3
483
Tumor
-0.3
232
Normal
-0.3
664
Normal
-0.3
724
Normal
-0.3
432
Normal
-0.3
258
Normal
-0.3
311
Tumor
-0.3
375
Tumor
-0.3
914
Normal
-0.3
824
Normal
-0.3
465
Tumor
-0.3
455
Tumor
-0.3
922
Normal
-0.3
685
Tumor
-0.3
777
Tumor
-0.3
355
Tumor
-0.4
271
Tumor
-0.4
231
Tumor
-0.4
571
Tumor
-0.4
982
Normal
-0.4
538
Normal
-0.4
435
Tumor
-0.4
823
Tumor
-0.4
937
Tumor
-0.4
411
Tumor
-0.4
963
Tumor
-0.5
878
Normal
-0.5
648
Normal
-0.5
112
Tumor
-0.5
262
Normal
-0.5
447
Tumor
-0.5
866
Normal
-0.5
814
Normal
-0.5
857
Tumor
-0.5
867
Tumor
-0.5
938
Normal
-0.6
557
Tumor
-0.6
268
Normal
-0.6
981
Tumor
-0.6
975
Tumor
-0.6
267
Tumor
-0.6
448
Normal
-0.6
813
Tumor
-0.7
881
Tumor
-0.7
113
Tumor
-0.7
863
Tumor
-0.7
917
Tumor
-0.7
1043
Tumor
-0.8
665
Tumor
-1.0
123
Tumor
-1.0
1013
Tumor
-1.1
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
