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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
71.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
0.9
147
Tumor
0.6
615
Tumor
0.6
915
Tumor
0.6
426
Normal
0.5
481
Tumor
0.5
231
Tumor
0.5
477
Tumor
0.5
127
Tumor
0.5
483
Tumor
0.5
965
Tumor
0.5
1043
Tumor
0.5
171
Tumor
0.5
745
Tumor
0.5
937
Tumor
0.5
911
Tumor
0.4
723
Tumor
0.4
714
Normal
0.4
537
Tumor
0.4
515
Tumor
0.4
616
Normal
0.4
482
Normal
0.4
777
Tumor
0.4
534
Normal
0.4
1046
Normal
0.4
698
Normal
0.4
696
Normal
0.4
414
Normal
0.4
715
Tumor
0.4
742
Normal
0.4
222
Normal
0.4
867
Tumor
0.4
756
Normal
0.4
862
Normal
0.4
422
Normal
0.4
858
Normal
0.4
518
Normal
0.4
112
Tumor
0.4
727
Tumor
0.4
716
Normal
0.4
647
Tumor
0.4
412
Normal
0.4
484
Normal
0.4
472
Normal
0.4
313
Tumor
0.3
648
Normal
0.3
423
Tumor
0.3
261
Tumor
0.3
258
Normal
0.3
665
Tumor
0.3
554
Normal
0.3
695
Tumor
0.3
114
Normal
0.3
824
Normal
0.3
746
Normal
0.3
546
Normal
0.3
882
Normal
0.3
642
Normal
0.3
981
Tumor
0.3
938
Normal
0.3
232
Normal
0.3
137
Tumor
0.3
473
Tumor
0.3
1022
Normal
0.3
912
Normal
0.3
926
Normal
0.3
424
Normal
0.3
618
Normal
0.3
514
Normal
0.3
111
Normal
0.3
666
Normal
0.3
342
Normal
0.3
128
Normal
0.3
196
Normal
0.3
1045
Tumor
0.3
636
Normal
0.3
428
Normal
0.3
1014
Normal
0.3
755
Tumor
0.3
513
Tumor
0.3
728
Normal
0.3
922
Normal
0.3
1027
Tumor
0.3
356
Normal
0.3
1026
Normal
0.3
528
Normal
0.3
738
Normal
0.3
664
Normal
0.3
464
Normal
0.3
162
Normal
0.3
952
Normal
0.3
1032
Normal
0.2
527
Tumor
0.2
785
Tumor
0.2
851
Tumor
0.2
957
Tumor
0.2
328
Normal
0.2
737
Tumor
0.2
868
Normal
0.2
172
Normal
0.2
448
Normal
0.2
465
Tumor
0.2
314
Normal
0.2
958
Normal
0.2
526
Normal
0.2
884
Normal
0.2
956
Normal
0.2
964
Normal
0.2
388
Normal
0.2
148
Normal
0.2
452
Normal
0.2
131
Tumor
0.2
553
Tumor
0.2
436
Normal
0.2
411
Tumor
0.2
416
Normal
0.2
278
Normal
0.2
786
Normal
0.2
914
Normal
0.2
944
Normal
0.2
1042
Normal
0.2
866
Normal
0.2
451
Tumor
0.2
267
Tumor
0.2
113
Tumor
0.2
466
Normal
0.2
571
Tumor
0.2
286
Normal
0.2
557
Tumor
0.2
628
Normal
0.2
818
Normal
0.2
366
Normal
0.2
462
Normal
0.2
924
Normal
0.2
982
Normal
0.2
572
Normal
0.2
327
Tumor
0.2
722
Normal
0.2
568
Normal
0.2
963
Tumor
0.2
864
Normal
0.2
365
Tumor
0.2
564
Normal
0.2
393
Tumor
0.2
663
Tumor
0.2
446
Normal
0.2
358
Normal
0.2
816
Normal
0.2
741
Tumor
0.2
186
Normal
0.2
123
Tumor
0.2
354
Normal
0.1
364
Normal
0.1
221
Tumor
0.1
394
Normal
0.1
967
Tumor
0.1
494
Normal
0.1
918
Normal
0.1
1041
Tumor
0.1
432
Normal
0.1
341
Tumor
0.1
136
Normal
0.1
567
Tumor
0.1
744
Normal
0.1
132
Normal
0.1
955
Tumor
0.1
361
Tumor
0.1
376
Normal
0.1
298
Normal
0.1
228
Normal
0.1
874
Normal
0.1
387
Tumor
0.1
214
Normal
0.1
456
Normal
0.1
978
Normal
0.1
488
Normal
0.1
662
Normal
0.1
563
Tumor
0.1
984
Normal
0.1
968
Normal
0.1
686
Normal
0.1
262
Normal
0.1
778
Normal
0.1
468
Normal
0.1
284
Normal
0.1
218
Normal
0.1
187
Tumor
0.1
353
Tumor
0.1
523
Tumor
0.1
878
Normal
0.1
272
Normal
0.1
352
Normal
0.1
1025
Tumor
0.1
516
Normal
0.1
1016
Normal
0.1
976
Normal
0.1
421
Tumor
0.1
873
Tumor
0.1
443
Tumor
0.1
386
Normal
0.1
351
Tumor
0.1
396
Normal
0.1
697
Tumor
0.1
574
Normal
0.1
474
Normal
0.1
954
Normal
0.0
852
Normal
0.0
431
Tumor
0.0
195
Tumor
0.0
124
Normal
0.0
913
Tumor
0.0
861
Tumor
0.0
212
Normal
0.0
368
Normal
0.0
268
Normal
0.0
558
Normal
0.0
975
Tumor
0.0
471
Tumor
0.0
977
Tumor
0.0
362
Normal
0.0
217
Tumor
0.0
138
Normal
0.0
126
Normal
0.0
1015
Tumor
0.0
415
Tumor
0.0
461
Tumor
0.0
672
Normal
0.0
142
Normal
0.0
713
Tumor
0.0
1044
Normal
0.0
332
Normal
0.0
433
Tumor
0.0
312
Normal
0.0
344
Normal
0.0
363
Tumor
0.0
916
Normal
0.0
367
Tumor
0.0
925
Tumor
0.0
191
Tumor
0.0
188
Normal
0.0
392
Normal
0.0
983
Tumor
0.0
445
Tumor
-0.1
815
Tumor
-0.1
145
Tumor
-0.1
617
Tumor
-0.1
1028
Normal
-0.1
641
Tumor
-0.1
444
Normal
-0.1
277
Tumor
-0.1
455
Tumor
-0.1
492
Normal
-0.1
966
Normal
-0.1
533
Tumor
-0.1
185
Tumor
-0.1
146
Normal
-0.1
524
Normal
-0.1
413
Tumor
-0.1
224
Normal
-0.1
331
Tumor
-0.1
538
Normal
-0.1
743
Tumor
-0.1
493
Tumor
-0.1
478
Normal
-0.1
425
Tumor
-0.1
257
Tumor
-0.1
671
Tumor
-0.1
384
Normal
-0.1
923
Tumor
-0.2
863
Tumor
-0.2
865
Tumor
-0.2
192
Normal
-0.2
627
Tumor
-0.2
536
Normal
-0.2
223
Tumor
-0.2
545
Tumor
-0.2
823
Tumor
-0.2
135
Tumor
-0.2
227
Tumor
-0.2
573
Tumor
-0.2
463
Tumor
-0.2
857
Tumor
-0.2
391
Tumor
-0.2
434
Normal
-0.2
285
Tumor
-0.2
141
Tumor
-0.2
355
Tumor
-0.2
883
Tumor
-0.2
498
Normal
-0.2
297
Tumor
-0.2
661
Tumor
-0.2
213
Tumor
-0.3
1021
Tumor
-0.3
943
Tumor
-0.3
375
Tumor
-0.3
721
Tumor
-0.3
951
Tumor
-0.3
271
Tumor
-0.3
125
Tumor
-0.3
881
Tumor
-0.3
517
Tumor
-0.3
487
Tumor
-0.3
467
Tumor
-0.3
357
Tumor
-0.3
685
Tumor
-0.3
1013
Tumor
-0.3
814
Normal
-0.3
427
Tumor
-0.4
817
Tumor
-0.4
161
Tumor
-0.4
813
Tumor
-0.4
283
Tumor
-0.4
921
Tumor
-0.4
435
Tumor
-0.4
447
Tumor
-0.4
385
Tumor
-0.4
877
Tumor
-0.5
525
Tumor
-0.5
311
Tumor
-0.5
917
Tumor
-0.6
535
Tumor
-0.6
383
Tumor
-0.6
953
Tumor
-0.7
491
Tumor
-0.7
343
Tumor
-0.7
497
Tumor
-0.7
395
Tumor
-0.8
211
Tumor
-0.9
1031
Tumor
-1.0
724
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
