MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:63.2 nTPM
GTEx:5.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:21.2 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.9
2019 Male, age 18, unknown 55.6
2828 Female, age 72, unknown 33.7
1827 Male, age 72, unknown 31.5
2666 Male, age 74, left hemisphere 26.7
2586 Male, age 75, left hemisphere 24.2
2411 Female, age 72, unknown 21.3
2219 Male, age 76, both hemispheres 20.4
1870 Female, age 42, unknown 19.5
1833 Male, age 53, unknown 14.7
1830 Male, age 51, unknown 11.5
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 24.6
2750 Male, age 76, both hemispheres 18.6
2047 Male, age 72, unknown 12.7
1828 Male, age 53, unknown 10.3
2016 Female, age 72, unknown 7.7
Inferior colliculus
nTPM: 20.9
2097 Female, age 72, unknown 38.4
1890 Male, age 53, unknown 18.5
1848 Female, age 42, unknown 16.2
2849 Male, age 72, unknown 10.6
Median raphe nucleus
nTPM: 34.2
2220 Male, age 76, midline 34.2
Periaquaductal grey, anterior
nTPM: 33.4
1795 Male, age 51, unknown 56.1
2502 Female, age 75, unknown 27.5
1947 Male, age 18, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 25.0
1831 Male, age 72, unknown 50.5
2464 Female, age 72, unknown 18.2
1840 Male, age 53, unknown 16.4
2850 Male, age 76, both hemispheres 14.7
Periaquaductal grey, lateral
nTPM: 18.6
2053 Male, age 18, unknown 25.4
2140 Male, age 76, both hemispheres 18.2
2272 Male, age 74, both hemispheres 12.2
Pretectal area
nTPM: 63.2
1816 Male, age 51, unknown 130.8
1815 Male, age 53, unknown 113.8
1944 Female, age 72, unknown 101.2
1817 Female, age 42, unknown 98.1
2007 Male, age 72, unknown 88.3
2667 Female, age 75, unknown 65.3
2316 Male, age 76, right hemisphere 24.4
2224 Female, age 72, unknown 23.0
2273 Male, age 74, both hemispheres 20.4
2825 Male, age 18, unknown 14.8
2407 Male, age 75, both hemispheres 14.7
Red nucleus
nTPM: 23.3
2785 Male, age 18, unknown 56.0
2588 Male, age 74, left hemisphere 29.7
2584 Male, age 75, left hemisphere 26.6
2823 Male, age 76, right hemisphere 25.5
1904 Male, age 53, unknown 24.0
1954 Female, age 42, unknown 22.1
2503 Female, age 72, unknown 20.4
1821 Female, age 72, unknown 18.2
1865 Male, age 51, unknown 15.9
2725 Female, age 75, unknown 15.5
2769 Male, age 72, unknown 13.0
2227 Male, age 72, unknown 12.8
Substantia nigra
nTPM: 19.3
1889 Female, age 72, unknown 60.8
2665 Male, age 74, both hemispheres 34.1
1916 Female, age 42, unknown 16.9
2590 Female, age 75, unknown 14.5
2583 Male, age 75, right hemisphere 14.3
1851 Male, age 51, unknown 11.8
2409 Female, age 72, unknown 11.7
2241 Male, age 72, unknown 11.5
1941 Male, age 53, unknown 10.5
2699 Male, age 18, unknown 6.8
Superior colliculus
nTPM: 36.4
2087 Female, age 72, unknown 86.9
1796 Male, age 53, unknown 44.8
1913 Female, age 42, unknown 43.9
2261 Male, age 18, unknown 43.9
1995 Male, age 72, unknown 36.3
2668 Female, age 75, unknown 36.1
1895 Male, age 76, right hemisphere 22.8
2664 Male, age 75, both hemispheres 18.3
2587 Male, age 74, left hemisphere 16.2
1839 Male, age 51, unknown 14.5
Ventral tegmental area
nTPM: 24.1
2218 Male, age 76, both hemispheres 38.4
1942 Male, age 51, unknown 32.2
2021 Male, age 53, unknown 23.7
2410 Female, age 72, unknown 19.8
1915 Female, age 42, unknown 16.8
2223 Female, age 72, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 43.2
Min nTPM: 0.1
Std nTPM: 5.9
Median nTPM: 3.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 43.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 15.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 15.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 15.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 13.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 13.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 25.4
Min nTPM: 3.0
Sample A Female 16.6
Sample B Female 14.3
Sample C Male 25.4
Sample D Male 3.0
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 148.7
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 16.6
Sample C Male 148.7
Sample D Male 25.5
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 15.1
Min nTPM: 8.4
Sample B Female 10.8
Sample C Male 15.1
Sample D Male 8.4
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 102.0
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 31.7
Sample C Male 102.0
Sample D Male 33.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.9
Sample A Male 19.9
Sample B Male 18.9
Sample C Female 23.2
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69201642 Antisense, RP_050324_03_A02, Mouse strain C57BL/6J (56 days, male) 2.7
72340125 Antisense, RP_051101_02_A05, Mouse strain C57BL/6J (56 days, male) 0.6

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