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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS12 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
965
Tumor
1.3
743
Tumor
1.2
1013
Tumor
1.2
957
Tumor
1.1
967
Tumor
1.0
685
Tumor
0.9
921
Tumor
0.9
1031
Tumor
0.9
877
Tumor
0.8
951
Tumor
0.8
983
Tumor
0.8
411
Tumor
0.8
881
Tumor
0.8
211
Tumor
0.8
977
Tumor
0.8
937
Tumor
0.8
515
Tumor
0.8
865
Tumor
0.7
1025
Tumor
0.7
545
Tumor
0.7
647
Tumor
0.7
1015
Tumor
0.7
737
Tumor
0.7
523
Tumor
0.7
427
Tumor
0.7
777
Tumor
0.7
355
Tumor
0.6
963
Tumor
0.6
461
Tumor
0.6
431
Tumor
0.6
923
Tumor
0.6
975
Tumor
0.6
535
Tumor
0.5
724
Normal
0.5
473
Tumor
0.5
285
Tumor
0.5
467
Tumor
0.5
915
Tumor
0.5
227
Tumor
0.5
817
Tumor
0.5
943
Tumor
0.5
727
Tumor
0.5
517
Tumor
0.5
447
Tumor
0.5
533
Tumor
0.4
1021
Tumor
0.4
883
Tumor
0.4
483
Tumor
0.4
471
Tumor
0.4
497
Tumor
0.4
527
Tumor
0.4
331
Tumor
0.4
925
Tumor
0.4
271
Tumor
0.4
425
Tumor
0.4
553
Tumor
0.4
814
Normal
0.4
1043
Tumor
0.4
815
Tumor
0.4
385
Tumor
0.3
413
Tumor
0.3
327
Tumor
0.3
135
Tumor
0.3
715
Tumor
0.3
953
Tumor
0.3
884
Normal
0.3
755
Tumor
0.3
463
Tumor
0.3
671
Tumor
0.3
1027
Tumor
0.3
395
Tumor
0.3
964
Normal
0.3
912
Normal
0.3
223
Tumor
0.3
455
Tumor
0.3
1041
Tumor
0.2
966
Normal
0.2
695
Tumor
0.2
873
Tumor
0.2
493
Tumor
0.2
721
Tumor
0.2
137
Tumor
0.2
913
Tumor
0.2
351
Tumor
0.2
375
Tumor
0.2
672
Normal
0.2
537
Tumor
0.2
813
Tumor
0.2
297
Tumor
0.2
557
Tumor
0.2
785
Tumor
0.2
882
Normal
0.2
918
Normal
0.2
697
Tumor
0.2
851
Tumor
0.2
573
Tumor
0.2
498
Normal
0.2
981
Tumor
0.2
313
Tumor
0.2
328
Normal
0.2
364
Normal
0.2
955
Tumor
0.2
713
Tumor
0.2
924
Normal
0.1
554
Normal
0.1
141
Tumor
0.1
412
Normal
0.1
546
Normal
0.1
363
Tumor
0.1
563
Tumor
0.1
823
Tumor
0.1
492
Normal
0.1
956
Normal
0.1
491
Tumor
0.1
534
Normal
0.1
858
Normal
0.1
221
Tumor
0.1
952
Normal
0.1
863
Tumor
0.1
663
Tumor
0.1
538
Normal
0.1
938
Normal
0.1
277
Tumor
0.1
536
Normal
0.1
738
Normal
0.1
867
Tumor
0.1
383
Tumor
0.1
878
Normal
0.1
518
Normal
0.1
818
Normal
0.1
778
Normal
0.1
488
Normal
0.1
968
Normal
0.1
415
Tumor
0.1
516
Normal
0.1
1028
Normal
0.1
525
Tumor
0.1
524
Normal
0.1
723
Tumor
0.1
728
Normal
0.1
664
Normal
0.1
922
Normal
0.1
824
Normal
0.1
958
Normal
0.1
954
Normal
0.1
917
Tumor
0.1
866
Normal
0.1
864
Normal
0.1
696
Normal
0.1
857
Tumor
0.1
361
Tumor
0.1
686
Normal
0.1
756
Normal
0.0
742
Normal
0.0
416
Normal
0.0
976
Normal
0.0
283
Tumor
0.0
487
Tumor
0.0
716
Normal
0.0
484
Normal
0.0
267
Tumor
0.0
284
Normal
0.0
311
Tumor
0.0
1026
Normal
0.0
852
Normal
0.0
257
Tumor
0.0
567
Tumor
0.0
528
Normal
0.0
365
Tumor
0.0
494
Normal
0.0
191
Tumor
0.0
357
Tumor
0.0
944
Normal
0.0
298
Normal
0.0
228
Normal
0.0
916
Normal
0.0
816
Normal
0.0
261
Tumor
0.0
911
Tumor
0.0
868
Normal
0.0
746
Normal
0.0
874
Normal
0.0
477
Tumor
0.0
861
Tumor
0.0
1032
Normal
0.0
312
Normal
0.0
665
Tumor
0.0
142
Normal
0.0
341
Tumor
0.0
862
Normal
0.0
914
Normal
0.0
217
Tumor
0.0
212
Normal
0.0
1022
Normal
-0.1
1046
Normal
-0.1
451
Tumor
-0.1
786
Normal
-0.1
161
Tumor
-0.1
568
Normal
-0.1
195
Tumor
-0.1
472
Normal
-0.1
393
Tumor
-0.1
558
Normal
-0.1
224
Normal
-0.1
741
Tumor
-0.1
435
Tumor
-0.1
423
Tumor
-0.1
286
Normal
-0.1
1044
Normal
-0.1
474
Normal
-0.1
465
Tumor
-0.1
113
Tumor
-0.1
356
Normal
-0.1
662
Normal
-0.1
722
Normal
-0.1
213
Tumor
-0.1
572
Normal
-0.1
714
Normal
-0.1
744
Normal
-0.1
745
Tumor
-0.1
1045
Tumor
-0.1
617
Tumor
-0.1
314
Normal
-0.1
278
Normal
-0.2
984
Normal
-0.2
641
Tumor
-0.2
187
Tumor
-0.2
526
Normal
-0.2
481
Tumor
-0.2
145
Tumor
-0.2
462
Normal
-0.2
513
Tumor
-0.2
332
Normal
-0.2
571
Tumor
-0.2
926
Normal
-0.2
387
Tumor
-0.2
422
Normal
-0.2
574
Normal
-0.2
514
Normal
-0.2
146
Normal
-0.2
421
Tumor
-0.2
648
Normal
-0.2
564
Normal
-0.2
123
Tumor
-0.2
196
Normal
-0.2
192
Normal
-0.2
353
Tumor
-0.2
232
Normal
-0.2
635
Tumor
-0.3
368
Normal
-0.3
448
Normal
-0.3
138
Normal
-0.3
1014
Normal
-0.3
366
Normal
-0.3
386
Normal
-0.3
698
Normal
-0.3
1042
Normal
-0.3
352
Normal
-0.3
433
Tumor
-0.3
982
Normal
-0.3
428
Normal
-0.3
136
Normal
-0.3
367
Tumor
-0.3
666
Normal
-0.3
343
Tumor
-0.3
426
Normal
-0.3
396
Normal
-0.3
1016
Normal
-0.3
362
Normal
-0.3
468
Normal
-0.3
218
Normal
-0.3
112
Tumor
-0.3
392
Normal
-0.3
478
Normal
-0.3
443
Tumor
-0.3
127
Tumor
-0.3
445
Tumor
-0.4
414
Normal
-0.4
268
Normal
-0.4
354
Normal
-0.4
615
Tumor
-0.4
147
Tumor
-0.4
222
Normal
-0.4
171
Tumor
-0.4
482
Normal
-0.4
456
Normal
-0.4
214
Normal
-0.4
114
Normal
-0.4
272
Normal
-0.4
132
Normal
-0.4
262
Normal
-0.4
128
Normal
-0.4
424
Normal
-0.4
185
Tumor
-0.4
661
Tumor
-0.4
444
Normal
-0.4
126
Normal
-0.4
258
Normal
-0.4
388
Normal
-0.4
376
Normal
-0.5
111
Normal
-0.5
188
Normal
-0.5
391
Tumor
-0.5
394
Normal
-0.5
642
Normal
-0.5
627
Tumor
-0.5
125
Tumor
-0.5
436
Normal
-0.5
466
Normal
-0.5
124
Normal
-0.5
231
Tumor
-0.6
148
Normal
-0.6
384
Normal
-0.6
464
Normal
-0.6
636
Normal
-0.6
434
Normal
-0.6
978
Normal
-0.6
344
Normal
-0.6
186
Normal
-0.7
452
Normal
-0.7
172
Normal
-0.7
628
Normal
-0.7
618
Normal
-0.7
432
Normal
-0.7
446
Normal
-0.7
358
Normal
-0.7
162
Normal
-0.8
342
Normal
-0.9
616
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
