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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCARB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
111.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
92.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
89.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
74.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
68.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
57.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
51.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
49.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
48.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCARB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.2
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
164.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
122.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
118.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
115.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
107.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
105.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
104.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
101.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
99.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
97.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
94.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
93.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
92.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
91.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
90.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
88.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
87.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
86.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
86.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
85.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
82.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
82.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
82.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
82.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
81.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
81.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
81.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
80.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
80.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
80.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
80.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
79.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
78.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
78.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
77.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
77.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
75.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
75.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
75.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
75.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
75.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
74.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
74.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
74.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
73.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
72.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
72.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
71.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
71.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
71.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
70.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
69.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
69.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
68.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
68.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
68.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
68.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
68.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
67.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
67.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
67.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
67.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
67.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
66.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
66.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
66.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
65.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
65.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
65.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
64.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
64.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
64.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
63.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
63.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
63.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
61.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
61.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
61.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
60.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
58.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
58.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
57.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
57.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
57.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
57.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
57.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
57.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
56.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
55.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
54.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
52.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
52.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
52.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
52.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
52.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
51.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
50.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
48.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
46.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
45.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
45.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
45.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
1.4
124
Normal
1.1
421
Tumor
0.9
456
Normal
0.8
111
Normal
0.8
816
Normal
0.7
354
Normal
0.7
746
Normal
0.7
862
Normal
0.7
422
Normal
0.6
125
Tumor
0.6
344
Normal
0.6
412
Normal
0.6
426
Normal
0.6
666
Normal
0.6
824
Normal
0.6
432
Normal
0.6
716
Normal
0.6
744
Normal
0.5
1022
Normal
0.5
858
Normal
0.5
952
Normal
0.5
366
Normal
0.5
618
Normal
0.5
362
Normal
0.5
616
Normal
0.5
721
Tumor
0.5
343
Tumor
0.5
222
Normal
0.5
257
Tumor
0.5
298
Normal
0.5
743
Tumor
0.5
162
Normal
0.5
272
Normal
0.5
534
Normal
0.5
1026
Normal
0.5
342
Normal
0.5
462
Normal
0.5
1042
Normal
0.5
312
Normal
0.4
636
Normal
0.4
428
Normal
0.4
742
Normal
0.4
136
Normal
0.4
696
Normal
0.4
488
Normal
0.4
424
Normal
0.4
648
Normal
0.4
172
Normal
0.4
186
Normal
0.4
516
Normal
0.4
554
Normal
0.4
148
Normal
0.4
955
Tumor
0.4
364
Normal
0.4
464
Normal
0.4
436
Normal
0.4
664
Normal
0.4
448
Normal
0.4
786
Normal
0.4
278
Normal
0.4
446
Normal
0.4
874
Normal
0.4
232
Normal
0.4
434
Normal
0.4
882
Normal
0.4
1014
Normal
0.4
1043
Tumor
0.3
926
Normal
0.3
365
Tumor
0.3
686
Normal
0.3
341
Tumor
0.3
722
Normal
0.3
262
Normal
0.3
723
Tumor
0.3
916
Normal
0.3
868
Normal
0.3
352
Normal
0.3
878
Normal
0.3
258
Normal
0.3
146
Normal
0.3
494
Normal
0.3
546
Normal
0.3
756
Normal
0.3
478
Normal
0.3
713
Tumor
0.3
1025
Tumor
0.3
956
Normal
0.3
662
Normal
0.3
564
Normal
0.3
368
Normal
0.3
482
Normal
0.3
188
Normal
0.3
128
Normal
0.3
328
Normal
0.3
376
Normal
0.3
924
Normal
0.3
396
Normal
0.3
528
Normal
0.3
568
Normal
0.3
642
Normal
0.3
126
Normal
0.3
353
Tumor
0.3
218
Normal
0.3
358
Normal
0.2
223
Tumor
0.2
384
Normal
0.2
444
Normal
0.2
466
Normal
0.2
394
Normal
0.2
738
Normal
0.2
228
Normal
0.2
392
Normal
0.2
978
Normal
0.2
912
Normal
0.2
572
Normal
0.2
727
Tumor
0.2
938
Normal
0.2
628
Normal
0.2
1044
Normal
0.2
517
Tumor
0.2
472
Normal
0.2
714
Normal
0.2
672
Normal
0.2
715
Tumor
0.2
212
Normal
0.2
196
Normal
0.2
474
Normal
0.2
728
Normal
0.2
132
Normal
0.2
114
Normal
0.2
864
Normal
0.2
778
Normal
0.2
925
Tumor
0.2
414
Normal
0.2
867
Tumor
0.2
271
Tumor
0.2
386
Normal
0.2
866
Normal
0.2
538
Normal
0.2
452
Normal
0.2
884
Normal
0.2
268
Normal
0.2
1046
Normal
0.2
914
Normal
0.2
574
Normal
0.1
968
Normal
0.1
536
Normal
0.1
1028
Normal
0.1
954
Normal
0.1
214
Normal
0.1
514
Normal
0.1
142
Normal
0.1
492
Normal
0.1
984
Normal
0.1
416
Normal
0.1
922
Normal
0.1
524
Normal
0.1
1016
Normal
0.1
1032
Normal
0.1
388
Normal
0.1
395
Tumor
0.1
221
Tumor
0.1
284
Normal
0.1
627
Tumor
0.1
698
Normal
0.1
314
Normal
0.1
224
Normal
0.1
231
Tumor
0.1
518
Normal
0.1
943
Tumor
0.1
467
Tumor
0.1
523
Tumor
0.1
468
Normal
0.1
911
Tumor
0.1
818
Normal
0.1
526
Normal
0.1
332
Normal
0.1
918
Normal
0.0
361
Tumor
0.0
286
Normal
0.0
498
Normal
0.0
297
Tumor
0.0
356
Normal
0.0
944
Normal
0.0
852
Normal
0.0
185
Tumor
0.0
563
Tumor
0.0
958
Normal
0.0
187
Tumor
0.0
443
Tumor
0.0
192
Normal
0.0
966
Normal
0.0
413
Tumor
-0.1
484
Normal
-0.1
127
Tumor
-0.1
571
Tumor
-0.1
1041
Tumor
-0.1
137
Tumor
-0.1
425
Tumor
-0.1
331
Tumor
-0.1
161
Tumor
-0.1
471
Tumor
-0.1
964
Normal
-0.1
393
Tumor
-0.1
755
Tumor
-0.1
982
Normal
-0.1
195
Tumor
-0.1
217
Tumor
-0.1
145
Tumor
-0.1
558
Normal
-0.1
123
Tumor
-0.1
387
Tumor
-0.1
112
Tumor
-0.1
921
Tumor
-0.1
447
Tumor
-0.1
814
Normal
-0.1
976
Normal
-0.1
147
Tumor
-0.1
1045
Tumor
-0.1
515
Tumor
-0.1
481
Tumor
-0.1
813
Tumor
-0.1
138
Normal
-0.1
615
Tumor
-0.1
915
Tumor
-0.2
283
Tumor
-0.2
777
Tumor
-0.2
635
Tumor
-0.2
261
Tumor
-0.2
423
Tumor
-0.2
873
Tumor
-0.2
661
Tumor
-0.2
861
Tumor
-0.2
461
Tumor
-0.2
491
Tumor
-0.2
451
Tumor
-0.2
487
Tumor
-0.2
851
Tumor
-0.2
433
Tumor
-0.2
455
Tumor
-0.2
785
Tumor
-0.2
445
Tumor
-0.2
937
Tumor
-0.3
697
Tumor
-0.3
415
Tumor
-0.3
983
Tumor
-0.3
573
Tumor
-0.3
695
Tumor
-0.3
737
Tumor
-0.3
191
Tumor
-0.3
823
Tumor
-0.3
817
Tumor
-0.3
557
Tumor
-0.3
857
Tumor
-0.3
917
Tumor
-0.3
213
Tumor
-0.3
367
Tumor
-0.3
975
Tumor
-0.3
641
Tumor
-0.3
383
Tumor
-0.3
277
Tumor
-0.4
427
Tumor
-0.4
267
Tumor
-0.4
463
Tumor
-0.4
327
Tumor
-0.4
311
Tumor
-0.4
1031
Tumor
-0.4
745
Tumor
-0.4
663
Tumor
-0.4
483
Tumor
-0.4
135
Tumor
-0.4
665
Tumor
-0.4
881
Tumor
-0.4
477
Tumor
-0.4
913
Tumor
-0.4
741
Tumor
-0.4
923
Tumor
-0.4
357
Tumor
-0.4
1015
Tumor
-0.5
113
Tumor
-0.5
375
Tumor
-0.5
313
Tumor
-0.5
883
Tumor
-0.5
141
Tumor
-0.5
497
Tumor
-0.5
171
Tumor
-0.5
553
Tumor
-0.5
227
Tumor
-0.5
385
Tumor
-0.5
545
Tumor
-0.5
493
Tumor
-0.5
525
Tumor
-0.5
435
Tumor
-0.5
647
Tumor
-0.5
724
Normal
-0.5
671
Tumor
-0.5
131
Tumor
-0.6
685
Tumor
-0.6
285
Tumor
-0.6
953
Tumor
-0.6
391
Tumor
-0.6
977
Tumor
-0.6
513
Tumor
-0.6
527
Tumor
-0.6
863
Tumor
-0.6
465
Tumor
-0.6
351
Tumor
-0.6
211
Tumor
-0.6
815
Tumor
-0.6
951
Tumor
-0.6
355
Tumor
-0.6
567
Tumor
-0.6
363
Tumor
-0.6
431
Tumor
-0.7
535
Tumor
-0.7
1027
Tumor
-0.7
1021
Tumor
-0.7
473
Tumor
-0.7
965
Tumor
-0.7
981
Tumor
-0.8
877
Tumor
-0.8
963
Tumor
-0.8
533
Tumor
-0.8
967
Tumor
-0.9
537
Tumor
-1.0
865
Tumor
-1.0
957
Tumor
-1.1
411
Tumor
-1.2
1013
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
