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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
G3BP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
73.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
G3BP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
743
Tumor
1.2
285
Tumor
0.9
727
Tumor
0.8
943
Tumor
0.7
1043
Tumor
0.7
123
Tumor
0.7
724
Normal
0.7
161
Tumor
0.6
957
Tumor
0.6
327
Tumor
0.6
663
Tumor
0.6
851
Tumor
0.6
171
Tumor
0.6
427
Tumor
0.5
231
Tumor
0.5
1025
Tumor
0.5
1027
Tumor
0.5
487
Tumor
0.5
617
Tumor
0.5
223
Tumor
0.5
395
Tumor
0.5
463
Tumor
0.5
341
Tumor
0.5
983
Tumor
0.5
557
Tumor
0.5
567
Tumor
0.5
937
Tumor
0.5
955
Tumor
0.4
257
Tumor
0.4
125
Tumor
0.4
211
Tumor
0.4
661
Tumor
0.4
535
Tumor
0.4
977
Tumor
0.4
923
Tumor
0.4
1041
Tumor
0.4
481
Tumor
0.4
523
Tumor
0.3
685
Tumor
0.3
915
Tumor
0.3
865
Tumor
0.3
361
Tumor
0.3
351
Tumor
0.3
817
Tumor
0.3
721
Tumor
0.3
261
Tumor
0.3
665
Tumor
0.3
921
Tumor
0.3
343
Tumor
0.3
145
Tumor
0.3
331
Tumor
0.3
413
Tumor
0.3
715
Tumor
0.3
451
Tumor
0.3
671
Tumor
0.3
861
Tumor
0.3
497
Tumor
0.3
713
Tumor
0.3
283
Tumor
0.3
141
Tumor
0.2
1015
Tumor
0.2
467
Tumor
0.2
267
Tumor
0.2
367
Tumor
0.2
545
Tumor
0.2
573
Tumor
0.2
365
Tumor
0.2
881
Tumor
0.2
884
Normal
0.2
375
Tumor
0.2
187
Tumor
0.2
564
Normal
0.2
1013
Tumor
0.2
518
Normal
0.2
647
Tumor
0.2
191
Tumor
0.2
313
Tumor
0.2
524
Normal
0.2
195
Tumor
0.2
814
Normal
0.2
286
Normal
0.2
746
Normal
0.2
137
Tumor
0.2
1046
Normal
0.2
723
Tumor
0.2
714
Normal
0.2
648
Normal
0.2
428
Normal
0.2
311
Tumor
0.2
284
Normal
0.2
447
Tumor
0.2
572
Normal
0.2
228
Normal
0.2
786
Normal
0.1
742
Normal
0.1
911
Tumor
0.1
568
Normal
0.1
728
Normal
0.1
422
Normal
0.1
951
Tumor
0.1
355
Tumor
0.1
978
Normal
0.1
1026
Normal
0.1
866
Normal
0.1
938
Normal
0.1
258
Normal
0.1
664
Normal
0.1
232
Normal
0.1
222
Normal
0.1
218
Normal
0.1
628
Normal
0.1
558
Normal
0.1
391
Tumor
0.1
882
Normal
0.1
563
Tumor
0.1
396
Normal
0.1
262
Normal
0.1
666
Normal
0.1
278
Normal
0.1
383
Tumor
0.1
864
Normal
0.1
537
Tumor
0.1
426
Normal
0.1
868
Normal
0.1
916
Normal
0.1
424
Normal
0.1
297
Tumor
0.1
466
Normal
0.1
913
Tumor
0.1
393
Tumor
0.1
922
Normal
0.1
862
Normal
0.1
867
Tumor
0.1
312
Normal
0.1
917
Tumor
0.1
474
Normal
0.1
414
Normal
0.1
514
Normal
0.1
528
Normal
0.1
468
Normal
0.1
968
Normal
0.1
877
Tumor
0.1
912
Normal
0.1
918
Normal
0.1
636
Normal
0.1
1016
Normal
0.1
135
Tumor
0.1
1021
Tumor
0.1
462
Normal
0.1
356
Normal
0.1
756
Normal
0.1
472
Normal
0.1
525
Tumor
0.1
221
Tumor
0.1
113
Tumor
0.1
737
Tumor
0.1
662
Normal
0.0
536
Normal
0.0
386
Normal
0.0
482
Normal
0.0
738
Normal
0.0
268
Normal
0.0
493
Tumor
0.0
984
Normal
0.0
777
Tumor
0.0
953
Tumor
0.0
448
Normal
0.0
824
Normal
0.0
517
Tumor
0.0
574
Normal
0.0
858
Normal
0.0
1014
Normal
0.0
212
Normal
0.0
455
Tumor
0.0
616
Normal
0.0
716
Normal
0.0
188
Normal
0.0
421
Tumor
0.0
883
Tumor
0.0
473
Tumor
0.0
298
Normal
0.0
456
Normal
0.0
778
Normal
0.0
741
Tumor
0.0
138
Normal
0.0
852
Normal
0.0
526
Normal
0.0
352
Normal
0.0
878
Normal
0.0
1028
Normal
0.0
952
Normal
0.0
926
Normal
0.0
392
Normal
0.0
484
Normal
0.0
722
Normal
0.0
967
Tumor
0.0
813
Tumor
0.0
217
Tumor
0.0
464
Normal
0.0
1044
Normal
0.0
446
Normal
0.0
387
Tumor
0.0
148
Normal
0.0
416
Normal
0.0
224
Normal
0.0
966
Normal
0.0
696
Normal
0.0
136
Normal
0.0
1022
Normal
0.0
1042
Normal
0.0
358
Normal
0.0
1032
Normal
0.0
494
Normal
0.0
131
Tumor
0.0
755
Tumor
0.0
436
Normal
0.0
328
Normal
0.0
126
Normal
0.0
515
Tumor
0.0
272
Normal
0.0
478
Normal
0.0
534
Normal
0.0
196
Normal
0.0
412
Normal
0.0
914
Normal
0.0
964
Normal
0.0
958
Normal
0.0
686
Normal
0.0
444
Normal
0.0
385
Tumor
0.0
132
Normal
0.0
364
Normal
0.0
452
Normal
0.0
641
Tumor
0.0
368
Normal
0.0
533
Tumor
0.0
431
Tumor
0.0
818
Normal
0.0
362
Normal
0.0
785
Tumor
-0.1
857
Tumor
-0.1
944
Normal
-0.1
924
Normal
-0.1
332
Normal
-0.1
642
Normal
-0.1
672
Normal
-0.1
815
Tumor
-0.1
956
Normal
-0.1
415
Tumor
-0.1
982
Normal
-0.1
697
Tumor
-0.1
816
Normal
-0.1
214
Normal
-0.1
411
Tumor
-0.1
954
Normal
-0.1
618
Normal
-0.1
698
Normal
-0.1
186
Normal
-0.1
314
Normal
-0.1
162
Normal
-0.1
434
Normal
-0.1
388
Normal
-0.1
147
Tumor
-0.1
744
Normal
-0.1
498
Normal
-0.1
394
Normal
-0.1
366
Normal
-0.1
627
Tumor
-0.1
227
Tumor
-0.1
213
Tumor
-0.1
874
Normal
-0.1
172
Normal
-0.1
975
Tumor
-0.1
384
Normal
-0.1
554
Normal
-0.1
745
Tumor
-0.1
492
Normal
-0.1
277
Tumor
-0.1
142
Normal
-0.1
976
Normal
-0.1
354
Normal
-0.1
981
Tumor
-0.1
342
Normal
-0.1
425
Tumor
-0.1
546
Normal
-0.1
124
Normal
-0.1
635
Tumor
-0.1
443
Tumor
-0.1
527
Tumor
-0.1
461
Tumor
-0.1
376
Normal
-0.1
471
Tumor
-0.1
513
Tumor
-0.2
344
Normal
-0.2
353
Tumor
-0.2
925
Tumor
-0.2
516
Normal
-0.2
271
Tumor
-0.2
488
Normal
-0.2
192
Normal
-0.2
432
Normal
-0.2
695
Tumor
-0.2
114
Normal
-0.2
863
Tumor
-0.2
823
Tumor
-0.2
357
Tumor
-0.2
111
Normal
-0.2
433
Tumor
-0.2
423
Tumor
-0.2
128
Normal
-0.2
571
Tumor
-0.2
491
Tumor
-0.2
435
Tumor
-0.2
1045
Tumor
-0.2
477
Tumor
-0.2
1031
Tumor
-0.3
445
Tumor
-0.3
538
Normal
-0.3
127
Tumor
-0.3
146
Normal
-0.3
963
Tumor
-0.3
363
Tumor
-0.3
553
Tumor
-0.3
615
Tumor
-0.3
185
Tumor
-0.4
483
Tumor
-0.4
873
Tumor
-0.4
465
Tumor
-0.5
112
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
