HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:36.3 nTPM
GTEx:27.6 nTPM
FANTOM5:70.9 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:96.0 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036894Antibody HPA042828
Glial cells LowMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 36.3
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
1898 Male, age 80, left hemisphere 42.3
1855 Male, age 76, left hemisphere 27.5
2529 Female, age 94, left hemisphere 25.5
2621 Female, age 67, right hemisphere 24.7
2148 Female, age 91, left hemisphere 23.7
1911 Female, age 85, right hemisphere 22.6
Dentate gyrus
nTPM: 28.2
2010 Male, age 76, both hemispheres 36.5
1927 Female, age 91, both hemispheres 33.7
2528 Male, age 74, both hemispheres 27.8
2246 Female, age 85, both hemispheres 27.0
2530 Female, age 94, left hemisphere 22.8
2531 Female, age 67, both hemispheres 21.3
Entorhinal gyrus
nTPM: 26.6
1938 Female, age 85, left hemisphere 33.3
2764 Male, age 80, right hemisphere 30.2
1787 Male, age 76, left hemisphere 28.9
2117 Female, age 91, right hemisphere 23.5
2613 Female, age 94, left hemisphere 23.1
2686 Male, age 75, right hemisphere 20.4
Hippocampus, CA1
nTPM: 32.9
2749 Male, age 80, left hemisphere 51.2
1873 Female, age 85, both hemispheres 34.1
2527 Male, age 74, both hemispheres 29.7
2045 Male, age 76, both hemispheres 26.2
2082 Female, age 91, right hemisphere 23.6
Hippocampus, CA2
nTPM: 30.0
1963 Male, age 80, left hemisphere 40.5
1892 Male, age 76, both hemispheres 40.3
2249 Male, age 74, both hemispheres 30.9
1940 Female, age 85, left hemisphere 23.8
2113 Female, age 91, right hemisphere 22.7
2437 Female, age 94, left hemisphere 21.7
Hippocampus, CA3
nTPM: 27.6
2137 Male, age 80, left hemisphere 35.9
1867 Male, age 76, both hemispheres 32.7
2436 Male, age 74, both hemispheres 30.0
1891 Female, age 85, both hemispheres 26.3
2620 Female, age 94, left hemisphere 22.6
2861 Female, age 67, both hemispheres 17.9
Parahippocampal cortex
nTPM: 27.8
1850 Male, age 80, both hemispheres 40.0
1990 Female, age 91, right hemisphere 33.2
1933 Female, age 85, both hemispheres 30.2
2018 Male, age 76, both hemispheres 28.4
2250 Female, age 67, right hemisphere 28.2
2693 Female, age 94, both hemispheres 25.4
2692 Male, age 74, both hemispheres 24.5
2245 Female, age 91, both hemispheres 23.8
2532 Female, age 72, left hemisphere 23.8
2622 Female, age 67, right hemisphere 20.1
Perirhinal gyrus
nTPM: 36.3
1847 Female, age 91, left hemisphere 44.0
1794 Male, age 80, right hemisphere 41.8
1841 Female, age 85, right hemisphere 36.2
2521 Female, age 94, right hemisphere 31.2
2848 Male, age 76, right hemisphere 28.5
Subiculum
nTPM: 26.6
1977 Female, age 85, both hemispheres 31.4
1901 Male, age 80, both hemispheres 28.5
2729 Female, age 91, right hemisphere 26.4
2619 Male, age 74, both hemispheres 25.7
2438 Female, age 94, left hemisphere 24.0
2042 Male, age 76, both hemispheres 23.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 27.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.6
Samples: 197

Max nTPM: 65.5
Min nTPM: 12.4
Std nTPM: 10.1
Median nTPM: 24.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 65.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 55.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 54.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 54.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 53.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 52.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 51.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 48.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 48.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 46.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 46.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 70.9
FF:10169-103B7 60 years, female 90.3
FF:10153-102I9 76 years, female 51.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 65.6
Pig sample Sample description nTPM
Subiculum
nTPM: 62.3
Samples: 4

Max nTPM: 79.6
Min nTPM: 52.2
Sample A Female 79.6
Sample B Female 59.7
Sample C Male 52.2
Sample D Male 57.5
Dorsal hippocampus
nTPM: 65.6
Samples: 4

Max nTPM: 81.5
Min nTPM: 54.4
Sample A Female 81.5
Sample B Female 66.4
Sample C Male 60.2
Sample D Male 54.4
Entorhinal cortex
nTPM: 62.7
Samples: 4

Max nTPM: 75.8
Min nTPM: 51.7
Sample A Female 67.0
Sample B Female 75.8
Sample C Male 56.4
Sample D Male 51.7
Ventral hippocampus
nTPM: 60.6
Samples: 4

Max nTPM: 73.7
Min nTPM: 55.5
Sample A Female 73.7
Sample B Female 55.5
Sample C Male 56.1
Sample D Male 57.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 96.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 83.6
Samples: 4

Max nTPM: 87.5
Min nTPM: 79.6
Sample A Male 79.6
Sample B Male 87.5
Sample C Female 85.2
Sample D Female 82.1
Hippocampal formation
nTPM: 96.1
Samples: 4

Max nTPM: 113.0
Min nTPM: 87.8
Sample A Male 113.0
Sample B Male 93.4
Sample C Female 90.0
Sample D Female 87.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
74882166 Antisense, RP_060315_04_E02, Mouse strain C57BL/6J (56 days, male) 2.7
69568938 Antisense, RP_050426_03_B05, Mouse strain C57BL/6J (56 days, male) 2.5

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