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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBL7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBL7 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
51.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
0.9
231
Tumor
0.7
283
Tumor
0.7
451
Tumor
0.7
1041
Tumor
0.7
925
Tumor
0.7
1027
Tumor
0.6
557
Tumor
0.6
533
Tumor
0.6
965
Tumor
0.6
427
Tumor
0.6
685
Tumor
0.5
571
Tumor
0.5
525
Tumor
0.5
513
Tumor
0.5
567
Tumor
0.5
463
Tumor
0.5
1021
Tumor
0.5
473
Tumor
0.5
367
Tumor
0.5
915
Tumor
0.5
477
Tumor
0.5
493
Tumor
0.5
487
Tumor
0.5
313
Tumor
0.4
663
Tumor
0.4
257
Tumor
0.4
435
Tumor
0.4
123
Tumor
0.4
491
Tumor
0.4
923
Tumor
0.4
171
Tumor
0.4
727
Tumor
0.3
343
Tumor
0.3
443
Tumor
0.3
1025
Tumor
0.3
737
Tumor
0.3
738
Normal
0.3
937
Tumor
0.3
355
Tumor
0.3
497
Tumor
0.3
977
Tumor
0.3
425
Tumor
0.3
865
Tumor
0.3
187
Tumor
0.3
223
Tumor
0.2
361
Tumor
0.2
413
Tumor
0.2
953
Tumor
0.2
813
Tumor
0.2
341
Tumor
0.2
185
Tumor
0.2
211
Tumor
0.2
635
Tumor
0.2
695
Tumor
0.2
721
Tumor
0.2
125
Tumor
0.2
918
Normal
0.2
127
Tumor
0.2
483
Tumor
0.2
465
Tumor
0.2
563
Tumor
0.2
224
Normal
0.2
755
Tumor
0.2
744
Normal
0.2
112
Tumor
0.2
823
Tumor
0.2
661
Tumor
0.2
1015
Tumor
0.2
1013
Tumor
0.1
375
Tumor
0.1
537
Tumor
0.1
883
Tumor
0.1
365
Tumor
0.1
741
Tumor
0.1
967
Tumor
0.1
387
Tumor
0.1
943
Tumor
0.1
615
Tumor
0.1
951
Tumor
0.1
742
Normal
0.1
277
Tumor
0.1
433
Tumor
0.1
391
Tumor
0.1
383
Tumor
0.1
135
Tumor
0.1
467
Tumor
0.1
922
Normal
0.1
926
Normal
0.1
527
Tumor
0.1
814
Normal
0.1
327
Tumor
0.1
431
Tumor
0.1
357
Tumor
0.1
113
Tumor
0.1
777
Tumor
0.1
627
Tumor
0.0
172
Normal
0.0
665
Tumor
0.0
745
Tumor
0.0
642
Normal
0.0
137
Tumor
0.0
921
Tumor
0.0
617
Tumor
0.0
724
Normal
0.0
368
Normal
0.0
461
Tumor
0.0
161
Tumor
0.0
366
Normal
0.0
267
Tumor
0.0
743
Tumor
0.0
351
Tumor
0.0
498
Normal
0.0
916
Normal
0.0
524
Normal
0.0
954
Normal
0.0
138
Normal
0.0
492
Normal
0.0
148
Normal
0.0
455
Tumor
-0.1
447
Tumor
-0.1
545
Tumor
-0.1
536
Normal
-0.1
362
Normal
-0.1
385
Tumor
-0.1
956
Normal
-0.1
647
Tumor
-0.1
1031
Tumor
-0.1
186
Normal
-0.1
384
Normal
-0.1
415
Tumor
-0.1
917
Tumor
-0.1
141
Tumor
-0.1
162
Normal
-0.1
636
Normal
-0.1
568
Normal
-0.1
785
Tumor
-0.1
285
Tumor
-0.1
1045
Tumor
-0.1
618
Normal
-0.1
857
Tumor
-0.1
423
Tumor
-0.1
421
Tumor
-0.1
468
Normal
-0.1
376
Normal
-0.1
852
Normal
-0.1
213
Tumor
-0.1
697
Tumor
-0.1
232
Normal
-0.1
851
Tumor
-0.1
867
Tumor
-0.1
444
Normal
-0.1
228
Normal
-0.1
877
Tumor
-0.1
515
Tumor
-0.1
1022
Normal
-0.1
873
Tumor
-0.1
478
Normal
-0.1
913
Tumor
-0.1
616
Normal
-0.1
641
Tumor
-0.1
331
Tumor
-0.1
574
Normal
-0.1
131
Tumor
-0.1
297
Tumor
-0.1
494
Normal
-0.2
188
Normal
-0.2
261
Tumor
-0.2
558
Normal
-0.2
628
Normal
-0.2
472
Normal
-0.2
394
Normal
-0.2
147
Tumor
-0.2
955
Tumor
-0.2
284
Normal
-0.2
462
Normal
-0.2
963
Tumor
-0.2
957
Tumor
-0.2
983
Tumor
-0.2
564
Normal
-0.2
517
Tumor
-0.2
924
Normal
-0.2
817
Tumor
-0.2
535
Tumor
-0.2
426
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
311
Tumor
-0.2
412
Normal
-0.2
938
Normal
-0.2
452
Normal
-0.2
1026
Normal
-0.2
863
Tumor
-0.2
516
Normal
-0.2
363
Tumor
-0.2
392
Normal
-0.2
422
Normal
-0.2
434
Normal
-0.2
1043
Tumor
-0.2
723
Tumor
-0.2
481
Tumor
-0.2
388
Normal
-0.2
572
Normal
-0.2
396
Normal
-0.2
824
Normal
-0.2
984
Normal
-0.2
728
Normal
-0.2
395
Tumor
-0.2
353
Tumor
-0.2
546
Normal
-0.2
526
Normal
-0.2
191
Tumor
-0.2
858
Normal
-0.2
786
Normal
-0.3
1016
Normal
-0.3
554
Normal
-0.3
672
Normal
-0.3
271
Tumor
-0.3
978
Normal
-0.3
386
Normal
-0.3
716
Normal
-0.3
722
Normal
-0.3
268
Normal
-0.3
966
Normal
-0.3
212
Normal
-0.3
713
Tumor
-0.3
221
Tumor
-0.3
686
Normal
-0.3
286
Normal
-0.3
432
Normal
-0.3
446
Normal
-0.3
132
Normal
-0.3
715
Tumor
-0.3
1032
Normal
-0.3
944
Normal
-0.3
262
Normal
-0.3
518
Normal
-0.3
356
Normal
-0.3
696
Normal
-0.3
648
Normal
-0.3
1014
Normal
-0.3
666
Normal
-0.3
126
Normal
-0.3
471
Tumor
-0.3
514
Normal
-0.3
1044
Normal
-0.3
145
Tumor
-0.3
976
Normal
-0.3
868
Normal
-0.3
416
Normal
-0.3
671
Tumor
-0.3
818
Normal
-0.3
136
Normal
-0.3
258
Normal
-0.3
815
Tumor
-0.3
968
Normal
-0.3
1046
Normal
-0.3
393
Tumor
-0.3
272
Normal
-0.3
466
Normal
-0.3
538
Normal
-0.3
714
Normal
-0.3
488
Normal
-0.3
484
Normal
-0.3
436
Normal
-0.3
958
Normal
-0.4
981
Tumor
-0.4
445
Tumor
-0.4
428
Normal
-0.4
474
Normal
-0.4
192
Normal
-0.4
756
Normal
-0.4
964
Normal
-0.4
414
Normal
-0.4
146
Normal
-0.4
227
Tumor
-0.4
881
Tumor
-0.4
312
Normal
-0.4
698
Normal
-0.4
424
Normal
-0.4
534
Normal
-0.4
778
Normal
-0.4
364
Normal
-0.4
482
Normal
-0.4
456
Normal
-0.4
664
Normal
-0.4
142
Normal
-0.4
195
Tumor
-0.4
128
Normal
-0.4
332
Normal
-0.4
816
Normal
-0.4
982
Normal
-0.4
114
Normal
-0.4
344
Normal
-0.4
528
Normal
-0.4
464
Normal
-0.5
352
Normal
-0.5
314
Normal
-0.5
746
Normal
-0.5
662
Normal
-0.5
911
Tumor
-0.5
952
Normal
-0.5
111
Normal
-0.5
342
Normal
-0.5
862
Normal
-0.5
278
Normal
-0.5
217
Tumor
-0.5
354
Normal
-0.5
411
Tumor
-0.5
448
Normal
-0.5
975
Tumor
-0.5
864
Normal
-0.5
523
Tumor
-0.5
328
Normal
-0.5
358
Normal
-0.5
874
Normal
-0.5
861
Tumor
-0.5
124
Normal
-0.5
298
Normal
-0.6
553
Tumor
-0.6
866
Normal
-0.6
912
Normal
-0.6
884
Normal
-0.6
196
Normal
-0.6
914
Normal
-0.6
218
Normal
-0.6
878
Normal
-0.6
882
Normal
-0.7
214
Normal
-0.7
222
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
