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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIR1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
40.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
395.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
267
Tumor
2.3
431
Tumor
1.9
435
Tumor
1.5
443
Tumor
1.4
445
Tumor
1.2
743
Tumor
1.1
951
Tumor
1.0
537
Tumor
1.0
131
Tumor
1.0
535
Tumor
0.9
341
Tumor
0.9
965
Tumor
0.8
351
Tumor
0.8
432
Normal
0.8
487
Tumor
0.8
433
Tumor
0.8
473
Tumor
0.8
497
Tumor
0.7
123
Tumor
0.7
883
Tumor
0.6
1031
Tumor
0.6
815
Tumor
0.6
331
Tumor
0.6
937
Tumor
0.6
983
Tumor
0.6
127
Tumor
0.6
217
Tumor
0.6
161
Tumor
0.6
647
Tumor
0.5
641
Tumor
0.5
447
Tumor
0.5
436
Normal
0.5
724
Normal
0.5
113
Tumor
0.5
517
Tumor
0.5
387
Tumor
0.5
213
Tumor
0.5
285
Tumor
0.5
395
Tumor
0.5
553
Tumor
0.5
953
Tumor
0.5
434
Normal
0.5
1013
Tumor
0.5
391
Tumor
0.5
367
Tumor
0.5
967
Tumor
0.5
977
Tumor
0.5
393
Tumor
0.5
685
Tumor
0.5
857
Tumor
0.5
357
Tumor
0.5
112
Tumor
0.4
777
Tumor
0.4
617
Tumor
0.4
385
Tumor
0.4
963
Tumor
0.4
383
Tumor
0.4
533
Tumor
0.4
527
Tumor
0.4
493
Tumor
0.4
477
Tumor
0.4
525
Tumor
0.4
823
Tumor
0.4
545
Tumor
0.4
817
Tumor
0.4
1021
Tumor
0.4
913
Tumor
0.3
523
Tumor
0.3
957
Tumor
0.3
471
Tumor
0.3
695
Tumor
0.3
211
Tumor
0.3
615
Tumor
0.3
483
Tumor
0.3
635
Tumor
0.3
785
Tumor
0.3
297
Tumor
0.2
943
Tumor
0.2
191
Tumor
0.2
171
Tumor
0.2
881
Tumor
0.2
873
Tumor
0.2
923
Tumor
0.2
396
Normal
0.2
1015
Tumor
0.2
221
Tumor
0.2
877
Tumor
0.2
195
Tumor
0.2
386
Normal
0.2
925
Tumor
0.2
1045
Tumor
0.2
863
Tumor
0.2
955
Tumor
0.2
415
Tumor
0.2
141
Tumor
0.2
755
Tumor
0.2
851
Tumor
0.2
966
Normal
0.2
135
Tumor
0.2
571
Tumor
0.2
564
Normal
0.2
727
Tumor
0.2
954
Normal
0.2
861
Tumor
0.2
283
Tumor
0.2
944
Normal
0.2
536
Normal
0.2
491
Tumor
0.1
921
Tumor
0.1
271
Tumor
0.1
975
Tumor
0.1
978
Normal
0.1
665
Tumor
0.1
814
Normal
0.1
546
Normal
0.1
865
Tumor
0.1
1041
Tumor
0.1
721
Tumor
0.1
524
Normal
0.1
461
Tumor
0.1
392
Normal
0.1
261
Tumor
0.1
666
Normal
0.1
573
Tumor
0.1
481
Tumor
0.1
938
Normal
0.1
1025
Tumor
0.1
361
Tumor
0.1
867
Tumor
0.1
737
Tumor
0.1
353
Tumor
0.1
192
Normal
0.1
231
Tumor
0.1
628
Normal
0.0
715
Tumor
0.0
567
Tumor
0.0
311
Tumor
0.0
515
Tumor
0.0
484
Normal
0.0
355
Tumor
0.0
411
Tumor
0.0
964
Normal
0.0
697
Tumor
0.0
528
Normal
0.0
498
Normal
0.0
1043
Tumor
0.0
137
Tumor
0.0
388
Normal
0.0
917
Tumor
0.0
314
Normal
0.0
375
Tumor
0.0
664
Normal
0.0
516
Normal
0.0
538
Normal
0.0
534
Normal
0.0
1014
Normal
0.0
984
Normal
0.0
1042
Normal
0.0
298
Normal
0.0
662
Normal
0.0
648
Normal
0.0
492
Normal
0.0
956
Normal
0.0
187
Tumor
0.0
365
Tumor
0.0
444
Normal
0.0
557
Tumor
0.0
627
Tumor
0.0
924
Normal
0.0
952
Normal
0.0
968
Normal
0.0
672
Normal
0.0
686
Normal
-0.1
852
Normal
-0.1
327
Tumor
-0.1
446
Normal
-0.1
368
Normal
-0.1
1026
Normal
-0.1
145
Tumor
-0.1
363
Tumor
-0.1
976
Normal
-0.1
636
Normal
-0.1
332
Normal
-0.1
1044
Normal
-0.1
223
Tumor
-0.1
214
Normal
-0.1
698
Normal
-0.1
916
Normal
-0.1
563
Tumor
-0.1
257
Tumor
-0.1
1016
Normal
-0.1
572
Normal
-0.1
915
Tumor
-0.1
227
Tumor
-0.1
1028
Normal
-0.1
224
Normal
-0.1
218
Normal
-0.1
778
Normal
-0.1
616
Normal
-0.1
716
Normal
-0.1
286
Normal
-0.1
818
Normal
-0.1
362
Normal
-0.1
277
Tumor
-0.1
478
Normal
-0.1
494
Normal
-0.1
663
Tumor
-0.1
554
Normal
-0.1
514
Normal
-0.1
922
Normal
-0.1
574
Normal
-0.1
366
Normal
-0.1
188
Normal
-0.1
448
Normal
-0.1
958
Normal
-0.1
313
Tumor
-0.1
696
Normal
-0.1
262
Normal
-0.2
526
Normal
-0.2
474
Normal
-0.2
518
Normal
-0.2
488
Normal
-0.2
722
Normal
-0.2
568
Normal
-0.2
513
Tumor
-0.2
394
Normal
-0.2
671
Tumor
-0.2
1022
Normal
-0.2
185
Tumor
-0.2
1032
Normal
-0.2
412
Normal
-0.2
786
Normal
-0.2
114
Normal
-0.2
558
Normal
-0.2
746
Normal
-0.2
714
Normal
-0.2
866
Normal
-0.2
982
Normal
-0.2
472
Normal
-0.2
146
Normal
-0.2
268
Normal
-0.2
1046
Normal
-0.2
212
Normal
-0.2
384
Normal
-0.2
741
Tumor
-0.2
222
Normal
-0.2
228
Normal
-0.2
125
Tumor
-0.2
111
Normal
-0.3
981
Tumor
-0.3
258
Normal
-0.3
618
Normal
-0.3
196
Normal
-0.3
124
Normal
-0.3
756
Normal
-0.3
142
Normal
-0.3
918
Normal
-0.3
148
Normal
-0.3
911
Tumor
-0.3
284
Normal
-0.3
312
Normal
-0.3
744
Normal
-0.3
278
Normal
-0.3
824
Normal
-0.3
813
Tumor
-0.3
661
Tumor
-0.3
128
Normal
-0.3
343
Tumor
-0.3
864
Normal
-0.3
162
Normal
-0.3
354
Normal
-0.3
462
Normal
-0.4
138
Normal
-0.4
816
Normal
-0.4
858
Normal
-0.4
376
Normal
-0.4
642
Normal
-0.4
352
Normal
-0.4
232
Normal
-0.4
416
Normal
-0.4
728
Normal
-0.4
126
Normal
-0.4
926
Normal
-0.4
713
Tumor
-0.4
186
Normal
-0.4
482
Normal
-0.4
136
Normal
-0.4
328
Normal
-0.4
745
Tumor
-0.4
1027
Tumor
-0.4
738
Normal
-0.5
364
Normal
-0.5
742
Normal
-0.5
172
Normal
-0.5
147
Tumor
-0.5
132
Normal
-0.5
882
Normal
-0.5
344
Normal
-0.5
723
Tumor
-0.5
914
Normal
-0.5
912
Normal
-0.5
878
Normal
-0.5
884
Normal
-0.6
342
Normal
-0.6
868
Normal
-0.6
272
Normal
-0.6
874
Normal
-0.6
358
Normal
-0.6
862
Normal
-0.7
356
Normal
-0.7
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
