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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
149.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
694.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
629.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
523.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
418.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
416.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
390.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
384.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
371.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
363.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
362.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
355.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
352.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
335.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
313.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
309.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
305.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
302.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
299.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
279.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
277.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
276.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
276.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
276.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
275.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
274.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
271.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
267.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
265.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
263.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
261.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
260.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
259.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
257.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
255.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
255.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
250.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
249.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
248.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
248.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
248.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
246.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
245.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
242.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
242.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
241.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
239.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
239.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
238.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
237.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
236.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
236.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
235.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
232.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
231.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
231.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
230.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
228.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
227.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
224.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
224.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
220.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
220.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
219.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
217.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
215.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
215.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
212.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
210.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
210.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
209.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
208.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
208.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
207.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
206.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
205.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
204.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
203.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
202.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
201.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
201.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
201.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
200.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
196.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
195.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
195.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
195.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
194.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
194.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
192.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
192.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
191.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
190.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
189.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
188.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
187.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
186.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
184.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
183.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
182.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
182.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
182.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
182.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
181.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
179.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
179.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
178.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
177.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
176.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
175.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
174.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
173.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
173.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
172.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
172.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
171.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
170.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
170.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
170.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
168.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
168.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
168.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
167.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
167.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
167.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
166.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
166.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
165.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
163.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
162.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
162.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
162.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
161.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
161.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
160.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
160.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
160.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
158.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
158.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
157.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
157.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
156.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
156.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
155.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
152.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
151.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
151.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
150.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
150.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
149.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
148.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
147.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
146.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
146.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
146.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
145.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
144.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
143.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
143.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
143.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
142.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
142.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
142.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
142.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
140.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
140.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
140.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
139.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
138.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
138.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
138.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
138.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
137.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
137.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
137.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
136.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
135.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
134.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
134.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
133.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
133.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
132.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
132.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
131.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
130.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
129.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
128.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
128.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
128.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
128.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
127.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
127.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
127.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
127.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
127.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
126.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
126.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
126.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
126.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
126.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
125.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
125.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
125.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
124.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
123.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
122.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
122.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
121.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
120.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
120.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
120.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
120.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
120.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
119.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
119.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
118.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
117.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
117.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
116.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
116.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
116.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
113.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
113.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
111.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
111.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
111.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
110.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
110.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
110.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
109.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
108.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
108.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
108.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
108.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
107.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
107.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
106.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
106.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
106.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
105.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
105.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
104.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
102.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
102.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
102.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
101.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
101.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
101.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
100.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
100.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
100.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
100.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
100.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
97.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
96.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
96.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
96.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
96.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
96.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
95.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
95.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
94.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
94.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
94.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
94.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
94.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
93.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
93.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
92.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
92.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
90.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
89.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
89.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
88.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
87.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
86.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
85.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
85.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
84.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
84.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
84.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
84.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
84.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
83.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
81.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
81.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
81.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
81.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
81.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
78.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
76.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
75.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
73.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
73.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
72.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
71.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
71.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
71.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
71.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
70.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
69.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
68.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
67.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
67.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
67.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
61.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
60.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
58.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
58.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
58.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
56.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
56.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
55.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
54.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
54.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
49.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
43.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
37.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
35.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
35.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
163.1
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
412.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
379.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
366.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
340.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
340.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
338.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
336.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
335.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
327.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
325.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
312.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
310.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
299.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
299.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
295.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
292.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
285.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
284.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
276.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
273.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
266.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
266.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
261.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
259.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
257.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
254.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
254.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
253.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
253.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
251.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
251.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
251.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
248.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
247.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
245.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
245.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
241.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
240.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
240.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
239.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
236.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
234.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
233.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
231.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
227.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
225.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
225.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
223.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
221.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
213.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
213.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
212.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
209.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
208.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
208.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
205.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
204.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
201.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
199.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
199.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
197.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
196.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
195.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
194.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
193.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
192.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
192.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
191.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
188.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
187.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
186.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
185.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
184.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
184.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
183.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
182.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
181.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
180.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
179.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
178.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
175.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
173.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
173.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
173.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
172.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
172.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
171.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
171.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
171.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
171.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
170.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
169.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
169.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
169.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
168.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
167.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
166.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
164.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
164.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
163.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
161.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
161.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
161.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
161.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
160.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
159.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
158.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
158.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
158.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
157.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
156.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
155.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
153.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
152.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
152.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
150.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
149.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
149.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
148.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
148.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
147.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
147.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
146.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
146.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
146.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
145.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
144.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
144.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
143.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
143.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
142.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
139.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
138.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
138.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
138.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
137.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
136.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
136.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
136.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
135.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
133.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
132.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
131.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
131.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
129.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
128.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
128.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
128.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
128.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
127.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
127.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
126.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
126.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
126.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
126.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
125.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
125.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
124.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
123.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
121.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
121.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
120.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
119.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
119.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
119.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
118.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
116.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
115.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
114.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
114.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
113.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
112.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
110.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
110.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
107.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
107.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
107.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
107.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
107.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
106.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
106.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
104.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
102.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
101.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
99.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
99.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
98.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
98.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
97.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
97.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
96.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
93.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
92.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
92.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
91.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
91.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
91.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
90.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
89.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
89.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
89.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
86.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
86.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
81.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
81.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
80.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
80.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
76.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
75.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
75.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
71.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
70.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
67.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
61.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
61.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
60.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
0.7
741
Tumor
0.7
863
Tumor
0.7
742
Normal
0.7
482
Normal
0.6
746
Normal
0.6
915
Tumor
0.6
723
Tumor
0.6
342
Normal
0.6
862
Normal
0.6
222
Normal
0.6
1026
Normal
0.6
481
Tumor
0.6
912
Normal
0.6
714
Normal
0.6
298
Normal
0.6
911
Tumor
0.6
436
Normal
0.5
745
Tumor
0.5
858
Normal
0.5
738
Normal
0.5
756
Normal
0.5
162
Normal
0.5
818
Normal
0.5
1022
Normal
0.5
1027
Tumor
0.5
196
Normal
0.5
462
Normal
0.5
1046
Normal
0.5
952
Normal
0.5
128
Normal
0.5
744
Normal
0.5
824
Normal
0.5
616
Normal
0.5
648
Normal
0.5
172
Normal
0.5
786
Normal
0.5
432
Normal
0.5
944
Normal
0.5
484
Normal
0.5
477
Tumor
0.5
938
Normal
0.4
728
Normal
0.4
964
Normal
0.4
186
Normal
0.4
864
Normal
0.4
618
Normal
0.4
414
Normal
0.4
132
Normal
0.4
472
Normal
0.4
778
Normal
0.4
926
Normal
0.4
131
Tumor
0.4
148
Normal
0.4
722
Normal
0.4
376
Normal
0.4
422
Normal
0.4
955
Tumor
0.4
464
Normal
0.4
426
Normal
0.4
424
Normal
0.4
696
Normal
0.4
1044
Normal
0.4
218
Normal
0.4
528
Normal
0.4
488
Normal
0.4
922
Normal
0.4
448
Normal
0.4
466
Normal
0.3
546
Normal
0.3
1014
Normal
0.3
358
Normal
0.3
314
Normal
0.3
755
Tumor
0.3
394
Normal
0.3
456
Normal
0.3
435
Tumor
0.3
956
Normal
0.3
868
Normal
0.3
866
Normal
0.3
882
Normal
0.3
514
Normal
0.3
1032
Normal
0.3
878
Normal
0.3
127
Tumor
0.3
982
Normal
0.3
356
Normal
0.3
452
Normal
0.3
366
Normal
0.3
664
Normal
0.3
924
Normal
0.3
642
Normal
0.3
534
Normal
0.3
527
Tumor
0.3
518
Normal
0.3
716
Normal
0.3
558
Normal
0.2
257
Tumor
0.2
416
Normal
0.2
954
Normal
0.2
278
Normal
0.2
474
Normal
0.2
364
Normal
0.2
214
Normal
0.2
918
Normal
0.2
884
Normal
0.2
966
Normal
0.2
111
Normal
0.2
968
Normal
0.2
412
Normal
0.2
526
Normal
0.2
976
Normal
0.2
258
Normal
0.2
816
Normal
0.2
564
Normal
0.2
1016
Normal
0.2
428
Normal
0.2
568
Normal
0.2
554
Normal
0.2
136
Normal
0.2
354
Normal
0.2
636
Normal
0.2
628
Normal
0.2
352
Normal
0.2
984
Normal
0.2
958
Normal
0.2
228
Normal
0.2
1042
Normal
0.2
332
Normal
0.2
468
Normal
0.2
232
Normal
0.2
142
Normal
0.2
114
Normal
0.2
388
Normal
0.2
494
Normal
0.2
286
Normal
0.2
666
Normal
0.2
212
Normal
0.2
312
Normal
0.2
914
Normal
0.2
537
Tumor
0.2
396
Normal
0.2
328
Normal
0.2
978
Normal
0.2
662
Normal
0.2
137
Tumor
0.2
146
Normal
0.2
327
Tumor
0.2
1028
Normal
0.1
392
Normal
0.1
572
Normal
0.1
516
Normal
0.1
272
Normal
0.1
573
Tumor
0.1
446
Normal
0.1
227
Tumor
0.1
686
Normal
0.1
384
Normal
0.1
112
Tumor
0.1
517
Tumor
0.1
981
Tumor
0.1
977
Tumor
0.1
383
Tumor
0.1
415
Tumor
0.1
261
Tumor
0.1
363
Tumor
0.1
262
Normal
0.1
138
Normal
0.1
362
Normal
0.1
874
Normal
0.0
423
Tumor
0.0
1041
Tumor
0.0
617
Tumor
0.0
368
Normal
0.0
141
Tumor
0.0
852
Normal
0.0
574
Normal
0.0
386
Normal
0.0
743
Tumor
0.0
695
Tumor
0.0
284
Normal
0.0
431
Tumor
0.0
963
Tumor
0.0
515
Tumor
0.0
867
Tumor
0.0
361
Tumor
0.0
465
Tumor
0.0
478
Normal
0.0
344
Normal
0.0
916
Normal
-0.1
224
Normal
-0.1
147
Tumor
-0.1
126
Normal
-0.1
191
Tumor
-0.1
425
Tumor
-0.1
538
Normal
-0.1
387
Tumor
-0.1
1013
Tumor
-0.1
188
Normal
-0.1
672
Normal
-0.1
353
Tumor
-0.1
434
Normal
-0.1
124
Normal
-0.1
647
Tumor
-0.1
217
Tumor
-0.1
1043
Tumor
-0.1
727
Tumor
-0.1
357
Tumor
-0.2
113
Tumor
-0.2
171
Tumor
-0.2
857
Tumor
-0.2
433
Tumor
-0.2
883
Tumor
-0.2
567
Tumor
-0.2
861
Tumor
-0.2
444
Normal
-0.2
1045
Tumor
-0.2
525
Tumor
-0.2
492
Normal
-0.2
195
Tumor
-0.2
135
Tumor
-0.2
268
Normal
-0.2
498
Normal
-0.2
737
Tumor
-0.2
957
Tumor
-0.2
721
Tumor
-0.2
1021
Tumor
-0.3
447
Tumor
-0.3
615
Tumor
-0.3
145
Tumor
-0.3
663
Tumor
-0.3
777
Tumor
-0.3
627
Tumor
-0.3
524
Normal
-0.3
445
Tumor
-0.3
313
Tumor
-0.3
451
Tumor
-0.3
553
Tumor
-0.3
192
Normal
-0.3
487
Tumor
-0.3
533
Tumor
-0.3
715
Tumor
-0.3
785
Tumor
-0.3
563
Tumor
-0.3
635
Tumor
-0.3
365
Tumor
-0.4
724
Normal
-0.4
513
Tumor
-0.4
873
Tumor
-0.4
455
Tumor
-0.4
341
Tumor
-0.4
1025
Tumor
-0.4
473
Tumor
-0.4
925
Tumor
-0.4
967
Tumor
-0.4
123
Tumor
-0.5
483
Tumor
-0.5
536
Normal
-0.5
975
Tumor
-0.5
297
Tumor
-0.5
953
Tumor
-0.5
461
Tumor
-0.5
463
Tumor
-0.5
865
Tumor
-0.5
375
Tumor
-0.5
267
Tumor
-0.5
125
Tumor
-0.5
665
Tumor
-0.5
557
Tumor
-0.6
1015
Tumor
-0.6
213
Tumor
-0.6
421
Tumor
-0.6
951
Tumor
-0.6
223
Tumor
-0.6
391
Tumor
-0.6
355
Tumor
-0.6
427
Tumor
-0.6
471
Tumor
-0.6
491
Tumor
-0.6
271
Tumor
-0.6
231
Tumor
-0.6
713
Tumor
-0.6
923
Tumor
-0.6
185
Tumor
-0.6
413
Tumor
-0.6
983
Tumor
-0.6
571
Tumor
-0.7
685
Tumor
-0.7
1031
Tumor
-0.7
823
Tumor
-0.7
443
Tumor
-0.7
285
Tumor
-0.7
943
Tumor
-0.7
493
Tumor
-0.7
965
Tumor
-0.7
937
Tumor
-0.7
877
Tumor
-0.7
161
Tumor
-0.8
187
Tumor
-0.8
535
Tumor
-0.8
814
Normal
-0.8
221
Tumor
-0.8
913
Tumor
-0.8
851
Tumor
-0.8
881
Tumor
-0.8
331
Tumor
-0.8
367
Tumor
-0.9
813
Tumor
-0.9
411
Tumor
-0.9
641
Tumor
-0.9
277
Tumor
-0.9
815
Tumor
-0.9
817
Tumor
-0.9
497
Tumor
-1.0
917
Tumor
-1.0
697
Tumor
-1.0
283
Tumor
-1.0
351
Tumor
-1.0
921
Tumor
-1.0
393
Tumor
-1.0
671
Tumor
-1.1
467
Tumor
-1.1
311
Tumor
-1.1
523
Tumor
-1.1
343
Tumor
-1.2
545
Tumor
-1.2
395
Tumor
-1.3
661
Tumor
-1.3
385
Tumor
-1.5
211
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.