MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:22.3 nTPM
GTEx:2.4 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:7.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
2219 Male, age 76, both hemispheres 31.1
1833 Male, age 53, unknown 26.0
2411 Female, age 72, unknown 25.3
1830 Male, age 51, unknown 23.6
2586 Male, age 75, left hemisphere 22.3
2019 Male, age 18, unknown 20.8
2828 Female, age 72, unknown 19.3
1870 Female, age 42, unknown 18.5
1827 Male, age 72, unknown 18.3
2666 Male, age 74, left hemisphere 17.7
Dorsal raphe nucleus
nTPM: 16.8
2750 Male, age 76, both hemispheres 22.8
2016 Female, age 72, unknown 17.0
2047 Male, age 72, unknown 15.7
1828 Male, age 53, unknown 15.5
2298 Female, age 72, unknown 13.0
Inferior colliculus
nTPM: 18.8
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 18.9
1848 Female, age 42, unknown 18.6
2097 Female, age 72, unknown 18.4
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 16.8
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 15.8
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 14.9
2464 Female, age 72, unknown 19.3
1831 Male, age 72, unknown 15.3
1840 Male, age 53, unknown 14.0
2850 Male, age 76, both hemispheres 10.9
Periaquaductal grey, lateral
nTPM: 14.3
2053 Male, age 18, unknown 16.4
2272 Male, age 74, both hemispheres 13.8
2140 Male, age 76, both hemispheres 12.7
Pretectal area
nTPM: 17.4
2407 Male, age 75, both hemispheres 21.1
2007 Male, age 72, unknown 19.1
2667 Female, age 75, unknown 18.6
2316 Male, age 76, right hemisphere 18.1
1815 Male, age 53, unknown 18.0
1944 Female, age 72, unknown 18.0
2825 Male, age 18, unknown 17.1
1817 Female, age 42, unknown 17.0
2224 Female, age 72, unknown 16.3
1816 Male, age 51, unknown 15.1
2273 Male, age 74, both hemispheres 13.7
Red nucleus
nTPM: 22.3
1865 Male, age 51, unknown 25.3
2588 Male, age 74, left hemisphere 25.3
1904 Male, age 53, unknown 24.3
2785 Male, age 18, unknown 23.8
2769 Male, age 72, unknown 23.7
2823 Male, age 76, right hemisphere 23.3
2503 Female, age 72, unknown 23.0
1821 Female, age 72, unknown 21.5
1954 Female, age 42, unknown 21.0
2227 Male, age 72, unknown 20.8
2584 Male, age 75, left hemisphere 18.5
2725 Female, age 75, unknown 17.5
Substantia nigra
nTPM: 19.9
1916 Female, age 42, unknown 22.9
2241 Male, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 21.9
1851 Male, age 51, unknown 21.6
2409 Female, age 72, unknown 21.2
1941 Male, age 53, unknown 20.9
2699 Male, age 18, unknown 20.0
1889 Female, age 72, unknown 17.9
2665 Male, age 74, both hemispheres 15.9
2590 Female, age 75, unknown 14.2
Superior colliculus
nTPM: 20.3
2668 Female, age 75, unknown 27.8
1895 Male, age 76, right hemisphere 25.1
2587 Male, age 74, left hemisphere 20.0
1796 Male, age 53, unknown 19.8
1913 Female, age 42, unknown 19.5
1839 Male, age 51, unknown 19.4
1995 Male, age 72, unknown 18.9
2261 Male, age 18, unknown 18.2
2087 Female, age 72, unknown 17.4
2664 Male, age 75, both hemispheres 17.1
Ventral tegmental area
nTPM: 19.1
2410 Female, age 72, unknown 24.2
2223 Female, age 72, unknown 20.7
1942 Male, age 51, unknown 18.7
1915 Female, age 42, unknown 18.4
2218 Male, age 76, both hemispheres 18.2
2021 Male, age 53, unknown 14.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 4.8
Min nTPM: 0.5
Std nTPM: 0.8
Median nTPM: 2.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 4.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 4.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 4.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 4.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 14.9
Sample A Female 19.4
Sample B Female 14.9
Sample C Male 19.0
Sample D Male 27.4
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 31.6
Min nTPM: 17.1
Sample A Female 17.1
Sample B Female 24.4
Sample C Male 31.6
Sample D Male 26.2
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 24.5
Min nTPM: 18.1
Sample B Female 24.5
Sample C Male 18.1
Sample D Male 18.9
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 29.6
Min nTPM: 13.6
Sample A Female 21.4
Sample B Female 13.6
Sample C Male 29.6
Sample D Male 27.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 7.2
Sample C Female 8.3
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70300529 Antisense, RP_050607_01_G03, Mouse strain C57BL/6J (56 days, male) 0.6

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