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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
48.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.3
965
Tumor
1.2
967
Tumor
1.2
537
Tumor
1.2
951
Tumor
1.1
425
Tumor
1.1
977
Tumor
1.1
957
Tumor
1.0
131
Tumor
1.0
517
Tumor
0.9
473
Tumor
0.9
477
Tumor
0.9
497
Tumor
0.9
1013
Tumor
0.8
533
Tumor
0.8
523
Tumor
0.8
355
Tumor
0.8
1021
Tumor
0.7
471
Tumor
0.7
1015
Tumor
0.7
487
Tumor
0.7
535
Tumor
0.7
963
Tumor
0.7
883
Tumor
0.6
123
Tumor
0.6
943
Tumor
0.6
525
Tumor
0.6
727
Tumor
0.6
911
Tumor
0.6
695
Tumor
0.6
1031
Tumor
0.6
545
Tumor
0.6
351
Tumor
0.6
553
Tumor
0.6
921
Tumor
0.5
171
Tumor
0.5
367
Tumor
0.5
331
Tumor
0.5
161
Tumor
0.5
953
Tumor
0.5
815
Tumor
0.5
737
Tumor
0.5
975
Tumor
0.5
955
Tumor
0.5
515
Tumor
0.5
983
Tumor
0.5
937
Tumor
0.4
861
Tumor
0.4
755
Tumor
0.4
285
Tumor
0.4
461
Tumor
0.4
1041
Tumor
0.4
724
Normal
0.4
483
Tumor
0.4
527
Tumor
0.4
923
Tumor
0.4
777
Tumor
0.4
357
Tumor
0.4
567
Tumor
0.4
715
Tumor
0.4
817
Tumor
0.4
741
Tumor
0.4
341
Tumor
0.4
685
Tumor
0.4
211
Tumor
0.4
135
Tumor
0.4
493
Tumor
0.4
1025
Tumor
0.4
141
Tumor
0.4
557
Tumor
0.3
571
Tumor
0.3
411
Tumor
0.3
313
Tumor
0.3
297
Tumor
0.3
823
Tumor
0.3
443
Tumor
0.3
785
Tumor
0.3
271
Tumor
0.3
455
Tumor
0.3
881
Tumor
0.3
447
Tumor
0.3
647
Tumor
0.3
463
Tumor
0.3
867
Tumor
0.3
865
Tumor
0.3
427
Tumor
0.3
554
Normal
0.3
663
Tumor
0.3
745
Tumor
0.3
431
Tumor
0.3
393
Tumor
0.3
491
Tumor
0.2
877
Tumor
0.2
925
Tumor
0.2
227
Tumor
0.2
257
Tumor
0.2
966
Normal
0.2
112
Tumor
0.2
981
Tumor
0.2
546
Normal
0.2
363
Tumor
0.2
665
Tumor
0.2
375
Tumor
0.2
465
Tumor
0.2
573
Tumor
0.2
137
Tumor
0.2
385
Tumor
0.2
671
Tumor
0.2
873
Tumor
0.2
484
Normal
0.2
261
Tumor
0.2
851
Tumor
0.2
327
Tumor
0.2
746
Normal
0.2
538
Normal
0.2
635
Tumor
0.2
813
Tumor
0.2
445
Tumor
0.2
863
Tumor
0.2
534
Normal
0.1
697
Tumor
0.1
857
Tumor
0.1
383
Tumor
0.1
387
Tumor
0.1
915
Tumor
0.1
492
Normal
0.1
913
Tumor
0.1
524
Normal
0.1
328
Normal
0.1
878
Normal
0.1
917
Tumor
0.1
816
Normal
0.1
738
Normal
0.1
516
Normal
0.1
223
Tumor
0.1
395
Tumor
0.0
474
Normal
0.0
615
Tumor
0.0
125
Tumor
0.0
277
Tumor
0.0
661
Tumor
0.0
433
Tumor
0.0
1028
Normal
0.0
435
Tumor
0.0
283
Tumor
0.0
1032
Normal
0.0
984
Normal
0.0
472
Normal
0.0
924
Normal
0.0
518
Normal
0.0
231
Tumor
0.0
1026
Normal
0.0
1045
Tumor
0.0
627
Tumor
0.0
938
Normal
0.0
952
Normal
0.0
413
Tumor
0.0
412
Normal
0.0
423
Tumor
0.0
1022
Normal
0.0
814
Normal
0.0
185
Tumor
0.0
451
Tumor
0.0
494
Normal
0.0
968
Normal
0.0
267
Tumor
0.0
852
Normal
0.0
353
Tumor
0.0
563
Tumor
0.0
944
Normal
0.0
528
Normal
0.0
421
Tumor
0.0
1016
Normal
0.0
742
Normal
0.0
448
Normal
0.0
513
Tumor
-0.1
744
Normal
-0.1
187
Tumor
-0.1
922
Normal
-0.1
721
Tumor
-0.1
365
Tumor
-0.1
858
Normal
-0.1
698
Normal
-0.1
918
Normal
-0.1
142
Normal
-0.1
213
Tumor
-0.1
478
Normal
-0.1
982
Normal
-0.1
716
Normal
-0.1
714
Normal
-0.1
1042
Normal
-0.1
415
Tumor
-0.1
686
Normal
-0.1
212
Normal
-0.1
343
Tumor
-0.1
958
Normal
-0.1
127
Tumor
-0.1
113
Tumor
-0.1
824
Normal
-0.1
1043
Tumor
-0.1
978
Normal
-0.1
1014
Normal
-0.1
311
Tumor
-0.1
956
Normal
-0.1
874
Normal
-0.1
696
Normal
-0.1
954
Normal
-0.1
756
Normal
-0.1
778
Normal
-0.1
481
Tumor
-0.1
916
Normal
-0.1
488
Normal
-0.1
713
Tumor
-0.1
361
Tumor
-0.1
462
Normal
-0.1
864
Normal
-0.1
434
Normal
-0.1
866
Normal
-0.2
526
Normal
-0.2
356
Normal
-0.2
162
Normal
-0.2
728
Normal
-0.2
312
Normal
-0.2
217
Tumor
-0.2
452
Normal
-0.2
641
Tumor
-0.2
514
Normal
-0.2
436
Normal
-0.2
147
Tumor
-0.2
138
Normal
-0.2
298
Normal
-0.2
286
Normal
-0.2
882
Normal
-0.2
416
Normal
-0.2
268
Normal
-0.2
964
Normal
-0.2
172
Normal
-0.2
186
Normal
-0.2
278
Normal
-0.2
536
Normal
-0.2
368
Normal
-0.2
146
Normal
-0.2
364
Normal
-0.2
1044
Normal
-0.2
214
Normal
-0.2
498
Normal
-0.2
228
Normal
-0.2
564
Normal
-0.2
128
Normal
-0.2
262
Normal
-0.2
258
Normal
-0.2
136
Normal
-0.2
145
Tumor
-0.2
467
Tumor
-0.2
786
Normal
-0.2
662
Normal
-0.2
188
Normal
-0.3
362
Normal
-0.3
862
Normal
-0.3
195
Tumor
-0.3
976
Normal
-0.3
926
Normal
-0.3
272
Normal
-0.3
648
Normal
-0.3
222
Normal
-0.3
572
Normal
-0.3
376
Normal
-0.3
664
Normal
-0.3
884
Normal
-0.3
628
Normal
-0.3
446
Normal
-0.3
221
Tumor
-0.3
284
Normal
-0.3
132
Normal
-0.3
568
Normal
-0.3
723
Tumor
-0.3
342
Normal
-0.3
617
Tumor
-0.3
666
Normal
-0.3
114
Normal
-0.3
344
Normal
-0.3
818
Normal
-0.3
111
Normal
-0.3
1027
Tumor
-0.3
482
Normal
-0.3
232
Normal
-0.3
366
Normal
-0.3
722
Normal
-0.3
124
Normal
-0.3
148
Normal
-0.3
126
Normal
-0.4
386
Normal
-0.4
196
Normal
-0.4
396
Normal
-0.4
574
Normal
-0.4
191
Tumor
-0.4
444
Normal
-0.4
558
Normal
-0.4
224
Normal
-0.4
1046
Normal
-0.4
332
Normal
-0.4
468
Normal
-0.4
358
Normal
-0.4
426
Normal
-0.4
912
Normal
-0.4
391
Tumor
-0.4
914
Normal
-0.4
388
Normal
-0.5
456
Normal
-0.5
868
Normal
-0.5
466
Normal
-0.5
192
Normal
-0.5
218
Normal
-0.5
616
Normal
-0.5
636
Normal
-0.5
464
Normal
-0.5
352
Normal
-0.5
672
Normal
-0.5
422
Normal
-0.5
354
Normal
-0.6
432
Normal
-0.6
392
Normal
-0.6
618
Normal
-0.6
642
Normal
-0.6
384
Normal
-0.6
314
Normal
-0.6
428
Normal
-0.6
414
Normal
-0.6
424
Normal
-0.6
394
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
