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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
914
Normal
1.0
743
Tumor
0.9
983
Tumor
0.9
131
Tumor
0.8
161
Tumor
0.8
884
Normal
0.8
695
Tumor
0.7
517
Tumor
0.7
222
Normal
0.7
224
Normal
0.7
136
Normal
0.7
311
Tumor
0.7
1025
Tumor
0.7
1031
Tumor
0.6
958
Normal
0.6
964
Normal
0.6
145
Tumor
0.6
214
Normal
0.6
1013
Tumor
0.6
228
Normal
0.5
297
Tumor
0.5
196
Normal
0.5
478
Normal
0.5
331
Tumor
0.5
965
Tumor
0.5
162
Normal
0.5
984
Normal
0.5
474
Normal
0.5
218
Normal
0.5
135
Tumor
0.5
462
Normal
0.5
737
Tumor
0.5
1014
Normal
0.5
976
Normal
0.5
944
Normal
0.5
572
Normal
0.4
574
Normal
0.4
1032
Normal
0.4
172
Normal
0.4
186
Normal
0.4
912
Normal
0.4
568
Normal
0.4
1042
Normal
0.4
497
Tumor
0.4
535
Tumor
0.4
137
Tumor
0.4
978
Normal
0.4
286
Normal
0.4
938
Normal
0.4
284
Normal
0.4
482
Normal
0.4
954
Normal
0.4
355
Tumor
0.4
148
Normal
0.4
698
Normal
0.4
744
Normal
0.4
818
Normal
0.4
878
Normal
0.4
956
Normal
0.3
977
Tumor
0.3
472
Normal
0.3
192
Normal
0.3
926
Normal
0.3
563
Tumor
0.3
672
Normal
0.3
1026
Normal
0.3
815
Tumor
0.3
858
Normal
0.3
968
Normal
0.3
396
Normal
0.3
277
Tumor
0.3
283
Tumor
0.3
957
Tumor
0.3
481
Tumor
0.3
564
Normal
0.3
1022
Normal
0.3
312
Normal
0.3
357
Tumor
0.3
881
Tumor
0.3
953
Tumor
0.3
352
Normal
0.3
388
Normal
0.3
824
Normal
0.3
1016
Normal
0.3
922
Normal
0.3
526
Normal
0.3
465
Tumor
0.3
456
Normal
0.3
392
Normal
0.3
723
Tumor
0.2
332
Normal
0.2
343
Tumor
0.2
452
Normal
0.2
314
Normal
0.2
421
Tumor
0.2
395
Tumor
0.2
857
Tumor
0.2
924
Normal
0.2
816
Normal
0.2
212
Normal
0.2
951
Tumor
0.2
524
Normal
0.2
278
Normal
0.2
463
Tumor
0.2
394
Normal
0.2
981
Tumor
0.2
328
Normal
0.2
425
Tumor
0.2
955
Tumor
0.2
391
Tumor
0.2
722
Normal
0.2
211
Tumor
0.2
558
Normal
0.2
714
Normal
0.2
1041
Tumor
0.2
386
Normal
0.2
573
Tumor
0.2
523
Tumor
0.2
738
Normal
0.2
354
Normal
0.2
411
Tumor
0.2
313
Tumor
0.2
982
Normal
0.1
571
Tumor
0.1
514
Normal
0.1
1021
Tumor
0.1
742
Normal
0.1
471
Tumor
0.1
132
Normal
0.1
728
Normal
0.1
498
Normal
0.1
915
Tumor
0.1
823
Tumor
0.1
341
Tumor
0.1
671
Tumor
0.1
664
Normal
0.1
488
Normal
0.1
427
Tumor
0.1
188
Normal
0.1
921
Tumor
0.1
138
Normal
0.1
862
Normal
0.1
874
Normal
0.1
415
Tumor
0.1
554
Normal
0.1
1045
Tumor
0.1
477
Tumor
0.1
963
Tumor
0.1
1028
Normal
0.1
721
Tumor
0.1
662
Normal
0.1
428
Normal
0.1
741
Tumor
0.1
724
Normal
0.1
387
Tumor
0.1
534
Normal
0.1
716
Normal
0.1
461
Tumor
0.1
952
Normal
0.1
464
Normal
0.1
448
Normal
0.1
364
Normal
0.1
414
Normal
0.1
557
Tumor
0.1
422
Normal
0.1
298
Normal
0.1
358
Normal
0.1
344
Normal
0.1
852
Normal
0.1
648
Normal
0.0
528
Normal
0.0
484
Normal
0.0
385
Tumor
0.0
494
Normal
0.0
424
Normal
0.0
367
Tumor
0.0
696
Normal
0.0
431
Tumor
0.0
466
Normal
0.0
227
Tumor
0.0
491
Tumor
0.0
353
Tumor
0.0
376
Normal
0.0
492
Normal
0.0
966
Normal
0.0
413
Tumor
0.0
817
Tumor
0.0
468
Normal
0.0
416
Normal
0.0
515
Tumor
0.0
536
Normal
0.0
384
Normal
0.0
412
Normal
0.0
916
Normal
0.0
393
Tumor
0.0
217
Tumor
0.0
917
Tumor
0.0
271
Tumor
0.0
877
Tumor
0.0
356
Normal
0.0
1027
Tumor
0.0
285
Tumor
0.0
1015
Tumor
0.0
666
Normal
0.0
128
Normal
0.0
327
Tumor
0.0
518
Normal
0.0
342
Normal
0.0
444
Normal
0.0
146
Normal
0.0
868
Normal
0.0
864
Normal
0.0
647
Tumor
0.0
918
Normal
0.0
617
Tumor
0.0
538
Normal
0.0
455
Tumor
0.0
851
Tumor
0.0
686
Normal
0.0
943
Tumor
-0.1
434
Normal
-0.1
882
Normal
-0.1
546
Normal
-0.1
223
Tumor
-0.1
863
Tumor
-0.1
114
Normal
-0.1
366
Normal
-0.1
112
Tumor
-0.1
127
Tumor
-0.1
268
Normal
-0.1
362
Normal
-0.1
436
Normal
-0.1
636
Normal
-0.1
516
Normal
-0.1
525
Tumor
-0.1
187
Tumor
-0.1
473
Tumor
-0.1
351
Tumor
-0.1
967
Tumor
-0.1
642
Normal
-0.1
423
Tumor
-0.1
493
Tumor
-0.1
447
Tumor
-0.1
191
Tumor
-0.1
443
Tumor
-0.1
467
Tumor
-0.1
141
Tumor
-0.1
451
Tumor
-0.1
867
Tumor
-0.1
713
Tumor
-0.1
195
Tumor
-0.1
866
Normal
-0.1
221
Tumor
-0.1
1046
Normal
-0.1
383
Tumor
-0.1
1044
Normal
-0.2
433
Tumor
-0.2
426
Normal
-0.2
567
Tumor
-0.2
937
Tumor
-0.2
123
Tumor
-0.2
923
Tumor
-0.2
487
Tumor
-0.2
111
Normal
-0.2
126
Normal
-0.2
113
Tumor
-0.2
628
Normal
-0.2
213
Tumor
-0.2
368
Normal
-0.2
124
Normal
-0.2
663
Tumor
-0.2
171
Tumor
-0.2
142
Normal
-0.2
363
Tumor
-0.2
432
Normal
-0.2
975
Tumor
-0.3
365
Tumor
-0.3
125
Tumor
-0.3
361
Tumor
-0.3
685
Tumor
-0.3
883
Tumor
-0.3
715
Tumor
-0.3
537
Tumor
-0.3
618
Normal
-0.3
435
Tumor
-0.3
665
Tumor
-0.4
1043
Tumor
-0.4
483
Tumor
-0.4
261
Tumor
-0.4
727
Tumor
-0.4
527
Tumor
-0.4
446
Normal
-0.4
185
Tumor
-0.4
513
Tumor
-0.4
635
Tumor
-0.4
375
Tumor
-0.4
641
Tumor
-0.4
865
Tumor
-0.5
232
Normal
-0.5
272
Normal
-0.5
925
Tumor
-0.5
147
Tumor
-0.5
661
Tumor
-0.5
258
Normal
-0.5
262
Normal
-0.5
445
Tumor
-0.5
873
Tumor
-0.6
545
Tumor
-0.6
257
Tumor
-0.6
913
Tumor
-0.6
861
Tumor
-0.6
697
Tumor
-0.6
616
Normal
-0.6
533
Tumor
-0.6
231
Tumor
-0.6
615
Tumor
-0.7
267
Tumor
-0.7
627
Tumor
-0.7
911
Tumor
-0.8
553
Tumor
-0.8
813
Tumor
N/A
814
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
