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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLA2G12B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
107.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
81.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
72.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
72.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
70.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
66.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
64.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
63.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
58.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
55.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
50.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
37.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
30.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLA2G12B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.6
Number of samples
231
Samples
Sample
Description
TPM
DO50820
0 years, female, NA, stage:3, alive, 510 days
124.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
110.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
93.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
93.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
93.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
87.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
82.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
81.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
80.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
78.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
73.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
73.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
72.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
70.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
69.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
67.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
66.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
61.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
59.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
59.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
56.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
55.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
52.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
50.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
50.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
48.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
47.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
45.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
44.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
38.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.3
921
Tumor
1.2
965
Tumor
1.1
363
Tumor
1.0
1025
Tumor
1.0
227
Tumor
0.9
435
Tumor
0.9
554
Normal
0.8
171
Tumor
0.8
685
Tumor
0.8
147
Tumor
0.8
271
Tumor
0.8
1014
Normal
0.7
553
Tumor
0.7
952
Normal
0.7
367
Tumor
0.7
342
Normal
0.7
123
Tumor
0.7
465
Tumor
0.7
925
Tumor
0.6
452
Normal
0.6
473
Tumor
0.6
477
Tumor
0.6
533
Tumor
0.6
136
Normal
0.6
351
Tumor
0.6
114
Normal
0.6
1043
Tumor
0.5
915
Tumor
0.5
376
Normal
0.5
298
Normal
0.5
358
Normal
0.5
981
Tumor
0.5
746
Normal
0.5
648
Normal
0.5
128
Normal
0.5
132
Normal
0.5
517
Tumor
0.5
426
Normal
0.5
817
Tumor
0.4
124
Normal
0.4
138
Normal
0.4
278
Normal
0.4
911
Tumor
0.4
214
Normal
0.4
393
Tumor
0.4
967
Tumor
0.4
662
Normal
0.4
664
Normal
0.4
111
Normal
0.4
362
Normal
0.4
258
Normal
0.4
222
Normal
0.3
744
Normal
0.3
436
Normal
0.3
738
Normal
0.3
392
Normal
0.3
571
Tumor
0.3
131
Tumor
0.3
698
Normal
0.3
568
Normal
0.3
146
Normal
0.3
466
Normal
0.3
1027
Tumor
0.3
538
Normal
0.3
914
Normal
0.3
232
Normal
0.3
446
Normal
0.3
743
Tumor
0.3
394
Normal
0.3
186
Normal
0.3
366
Normal
0.3
984
Normal
0.3
357
Tumor
0.3
977
Tumor
0.3
172
Normal
0.3
982
Normal
0.3
422
Normal
0.3
196
Normal
0.3
1016
Normal
0.2
388
Normal
0.2
391
Tumor
0.2
518
Normal
0.2
745
Tumor
0.2
636
Normal
0.2
474
Normal
0.2
741
Tumor
0.2
727
Tumor
0.2
368
Normal
0.2
414
Normal
0.2
963
Tumor
0.2
951
Tumor
0.2
341
Tumor
0.2
127
Tumor
0.2
666
Normal
0.2
443
Tumor
0.2
715
Tumor
0.2
148
Normal
0.2
878
Normal
0.2
874
Normal
0.2
314
Normal
0.2
464
Normal
0.2
428
Normal
0.2
352
Normal
0.1
483
Tumor
0.1
396
Normal
0.1
354
Normal
0.1
481
Tumor
0.1
1031
Tumor
0.1
433
Tumor
0.1
445
Tumor
0.1
616
Normal
0.1
881
Tumor
0.1
231
Tumor
0.1
344
Normal
0.1
671
Tumor
0.1
696
Normal
0.1
365
Tumor
0.1
468
Normal
0.1
272
Normal
0.1
618
Normal
0.1
964
Normal
0.1
327
Tumor
0.1
424
Normal
0.1
564
Normal
0.1
955
Tumor
0.1
471
Tumor
0.1
492
Normal
0.1
413
Tumor
0.1
912
Normal
0.1
432
Normal
0.1
1026
Normal
0.1
1021
Tumor
0.1
737
Tumor
0.1
868
Normal
0.0
228
Normal
0.0
356
Normal
0.0
742
Normal
0.0
956
Normal
0.0
448
Normal
0.0
412
Normal
0.0
938
Normal
0.0
672
Normal
0.0
728
Normal
0.0
641
Tumor
0.0
162
Normal
0.0
861
Tumor
0.0
862
Normal
0.0
966
Normal
0.0
462
Normal
0.0
218
Normal
0.0
262
Normal
0.0
332
Normal
0.0
537
Tumor
0.0
112
Tumor
0.0
472
Normal
0.0
526
Normal
0.0
434
Normal
0.0
546
Normal
0.0
722
Normal
0.0
864
Normal
-0.1
331
Tumor
-0.1
456
Normal
-0.1
142
Normal
-0.1
423
Tumor
-0.1
983
Tumor
-0.1
723
Tumor
-0.1
958
Normal
-0.1
968
Normal
-0.1
534
Normal
-0.1
944
Normal
-0.1
188
Normal
-0.1
431
Tumor
-0.1
866
Normal
-0.1
482
Normal
-0.1
882
Normal
-0.1
976
Normal
-0.1
516
Normal
-0.1
1022
Normal
-0.1
617
Tumor
-0.1
451
Tumor
-0.1
514
Normal
-0.1
978
Normal
-0.1
713
Tumor
-0.1
126
Normal
-0.1
572
Normal
-0.1
444
Normal
-0.1
312
Normal
-0.1
628
Normal
-0.1
1046
Normal
-0.1
411
Tumor
-0.1
975
Tumor
-0.1
257
Tumor
-0.1
567
Tumor
-0.1
557
Tumor
-0.1
195
Tumor
-0.1
268
Normal
-0.1
1028
Normal
-0.1
786
Normal
-0.1
661
Tumor
-0.1
642
Normal
-0.2
494
Normal
-0.2
574
Normal
-0.2
361
Tumor
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
113
Tumor
-0.2
484
Normal
-0.2
284
Normal
-0.2
135
Tumor
-0.2
884
Normal
-0.2
386
Normal
-0.2
615
Tumor
-0.2
212
Normal
-0.2
867
Tumor
-0.2
686
Normal
-0.3
286
Normal
-0.3
714
Normal
-0.3
877
Tumor
-0.3
463
Tumor
-0.3
185
Tumor
-0.3
816
Normal
-0.3
778
Normal
-0.3
328
Normal
-0.3
923
Tumor
-0.3
261
Tumor
-0.3
488
Normal
-0.3
1032
Normal
-0.3
224
Normal
-0.3
536
Normal
-0.3
493
Tumor
-0.3
285
Tumor
-0.3
384
Normal
-0.3
478
Normal
-0.3
267
Tumor
-0.3
924
Normal
-0.3
421
Tumor
-0.3
455
Tumor
-0.3
756
Normal
-0.3
785
Tumor
-0.3
918
Normal
-0.4
558
Normal
-0.4
364
Normal
-0.4
524
Normal
-0.4
353
Tumor
-0.4
137
Tumor
-0.4
716
Normal
-0.4
161
Tumor
-0.4
415
Tumor
-0.4
1013
Tumor
-0.4
416
Normal
-0.4
823
Tumor
-0.4
145
Tumor
-0.4
387
Tumor
-0.5
355
Tumor
-0.5
635
Tumor
-0.5
697
Tumor
-0.5
217
Tumor
-0.5
883
Tumor
-0.5
528
Normal
-0.5
937
Tumor
-0.5
857
Tumor
-0.5
461
Tumor
-0.6
922
Normal
-0.6
513
Tumor
-0.6
953
Tumor
-0.6
954
Normal
-0.6
858
Normal
-0.6
815
Tumor
-0.6
192
Normal
-0.6
957
Tumor
-0.7
297
Tumor
-0.7
277
Tumor
-0.7
873
Tumor
-0.7
721
Tumor
-0.7
523
Tumor
-0.7
647
Tumor
-0.7
916
Normal
-0.7
1041
Tumor
-0.7
926
Normal
-0.7
447
Tumor
-0.7
665
Tumor
-0.7
535
Tumor
-0.8
187
Tumor
-0.8
545
Tumor
-0.8
427
Tumor
-0.8
213
Tumor
-0.8
818
Normal
-0.9
1045
Tumor
-0.9
824
Normal
-0.9
221
Tumor
-0.9
515
Tumor
-0.9
755
Tumor
-0.9
852
Normal
-0.9
375
Tumor
-0.9
223
Tumor
-0.9
863
Tumor
-0.9
563
Tumor
-0.9
467
Tumor
-0.9
313
Tumor
-1.0
498
Normal
-1.0
425
Tumor
-1.0
395
Tumor
-1.0
851
Tumor
-1.0
1015
Tumor
-1.0
141
Tumor
-1.1
627
Tumor
-1.1
343
Tumor
-1.1
527
Tumor
-1.1
865
Tumor
-1.1
525
Tumor
-1.1
497
Tumor
-1.1
814
Normal
-1.1
813
Tumor
-1.2
491
Tumor
-1.2
724
Normal
-1.2
943
Tumor
-1.3
777
Tumor
-1.3
191
Tumor
-1.3
663
Tumor
-1.5
913
Tumor
-1.6
385
Tumor
-1.6
283
Tumor
-1.6
917
Tumor
-1.6
125
Tumor
-1.7
383
Tumor
-1.8
211
Tumor
-1.8
311
Tumor
-2.3
573
Tumor
-2.7
487
Tumor
-2.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.