We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOC6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOC6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
0.9
635
Tumor
0.7
743
Tumor
0.7
343
Tumor
0.7
131
Tumor
0.7
135
Tumor
0.7
297
Tumor
0.6
425
Tumor
0.6
313
Tumor
0.6
1025
Tumor
0.6
471
Tumor
0.6
533
Tumor
0.5
497
Tumor
0.5
395
Tumor
0.5
817
Tumor
0.5
553
Tumor
0.5
257
Tumor
0.5
1021
Tumor
0.5
921
Tumor
0.5
815
Tumor
0.5
443
Tumor
0.5
147
Tumor
0.4
227
Tumor
0.4
363
Tumor
0.4
671
Tumor
0.4
125
Tumor
0.4
427
Tumor
0.4
431
Tumor
0.4
393
Tumor
0.4
865
Tumor
0.4
112
Tumor
0.4
1027
Tumor
0.3
311
Tumor
0.3
813
Tumor
0.3
617
Tumor
0.3
447
Tumor
0.3
523
Tumor
0.3
127
Tumor
0.3
1031
Tumor
0.3
695
Tumor
0.3
975
Tumor
0.3
221
Tumor
0.3
917
Tumor
0.3
881
Tumor
0.3
455
Tumor
0.3
527
Tumor
0.3
277
Tumor
0.3
721
Tumor
0.3
663
Tumor
0.2
351
Tumor
0.2
355
Tumor
0.2
435
Tumor
0.2
517
Tumor
0.2
851
Tumor
0.2
411
Tumor
0.2
823
Tumor
0.2
421
Tumor
0.2
814
Normal
0.2
877
Tumor
0.2
467
Tumor
0.2
385
Tumor
0.2
777
Tumor
0.2
661
Tumor
0.2
213
Tumor
0.2
445
Tumor
0.2
185
Tumor
0.2
647
Tumor
0.2
386
Normal
0.2
567
Tumor
0.2
925
Tumor
0.2
353
Tumor
0.2
465
Tumor
0.2
137
Tumor
0.2
285
Tumor
0.2
383
Tumor
0.2
132
Normal
0.2
697
Tumor
0.2
331
Tumor
0.1
432
Normal
0.1
727
Tumor
0.1
983
Tumor
0.1
413
Tumor
0.1
394
Normal
0.1
113
Tumor
0.1
957
Tumor
0.1
392
Normal
0.1
388
Normal
0.1
863
Tumor
0.1
396
Normal
0.1
525
Tumor
0.1
967
Tumor
0.1
375
Tumor
0.1
361
Tumor
0.1
434
Normal
0.1
146
Normal
0.1
641
Tumor
0.1
923
Tumor
0.1
451
Tumor
0.1
138
Normal
0.1
745
Tumor
0.1
913
Tumor
0.1
362
Normal
0.1
268
Normal
0.1
436
Normal
0.1
468
Normal
0.1
573
Tumor
0.1
741
Tumor
0.1
258
Normal
0.1
883
Tumor
0.1
365
Tumor
0.1
528
Normal
0.1
444
Normal
0.1
493
Tumor
0.0
188
Normal
0.0
422
Normal
0.0
262
Normal
0.0
367
Tumor
0.0
187
Tumor
0.0
713
Tumor
0.0
267
Tumor
0.0
286
Normal
0.0
515
Tumor
0.0
123
Tumor
0.0
473
Tumor
0.0
563
Tumor
0.0
456
Normal
0.0
627
Tumor
0.0
424
Normal
0.0
414
Normal
0.0
446
Normal
0.0
211
Tumor
0.0
452
Normal
0.0
136
Normal
0.0
937
Tumor
0.0
778
Normal
0.0
428
Normal
0.0
951
Tumor
0.0
737
Tumor
0.0
966
Normal
0.0
477
Tumor
0.0
648
Normal
0.0
278
Normal
0.0
955
Tumor
0.0
231
Tumor
0.0
376
Normal
0.0
977
Tumor
0.0
756
Normal
0.0
384
Normal
0.0
513
Tumor
0.0
914
Normal
0.0
466
Normal
0.0
232
Normal
0.0
568
Normal
0.0
642
Normal
0.0
564
Normal
0.0
423
Tumor
0.0
223
Tumor
0.0
368
Normal
0.0
722
Normal
0.0
535
Tumor
0.0
224
Normal
0.0
261
Tumor
0.0
332
Normal
0.0
426
Normal
0.0
662
Normal
0.0
416
Normal
0.0
284
Normal
0.0
387
Tumor
0.0
526
Normal
0.0
124
Normal
0.0
524
Normal
0.0
1045
Tumor
0.0
873
Tumor
0.0
728
Normal
0.0
738
Normal
0.0
664
Normal
0.0
111
Normal
0.0
312
Normal
0.0
665
Tumor
0.0
666
Normal
0.0
574
Normal
0.0
746
Normal
0.0
954
Normal
0.0
357
Tumor
-0.1
518
Normal
-0.1
554
Normal
-0.1
742
Normal
-0.1
141
Tumor
-0.1
514
Normal
-0.1
272
Normal
-0.1
461
Tumor
-0.1
462
Normal
-0.1
366
Normal
-0.1
911
Tumor
-0.1
978
Normal
-0.1
672
Normal
-0.1
354
Normal
-0.1
191
Tumor
-0.1
145
Tumor
-0.1
958
Normal
-0.1
636
Normal
-0.1
558
Normal
-0.1
956
Normal
-0.1
464
Normal
-0.1
344
Normal
-0.1
976
Normal
-0.1
571
Tumor
-0.1
463
Tumor
-0.1
218
Normal
-0.1
724
Normal
-0.1
228
Normal
-0.1
217
Tumor
-0.1
172
Normal
-0.1
944
Normal
-0.1
391
Tumor
-0.1
924
Normal
-0.1
142
Normal
-0.1
545
Tumor
-0.1
364
Normal
-0.1
148
Normal
-0.1
968
Normal
-0.1
358
Normal
-0.1
214
Normal
-0.1
352
Normal
-0.1
1016
Normal
-0.1
616
Normal
-0.1
963
Tumor
-0.1
786
Normal
-0.1
943
Tumor
-0.1
538
Normal
-0.1
126
Normal
-0.1
816
Normal
-0.1
314
Normal
-0.1
982
Normal
-0.1
953
Tumor
-0.1
864
Normal
-0.1
723
Tumor
-0.1
433
Tumor
-0.1
852
Normal
-0.1
516
Normal
-0.1
952
Normal
-0.1
474
Normal
-0.1
628
Normal
-0.1
615
Tumor
-0.1
868
Normal
-0.1
572
Normal
-0.1
536
Normal
-0.1
534
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
874
Normal
-0.1
478
Normal
-0.1
882
Normal
-0.1
162
Normal
-0.1
861
Tumor
-0.1
916
Normal
-0.1
618
Normal
-0.1
341
Tumor
-0.1
412
Normal
-0.1
878
Normal
-0.1
686
Normal
-0.1
685
Tumor
-0.1
114
Normal
-0.1
328
Normal
-0.1
964
Normal
-0.1
884
Normal
-0.1
696
Normal
-0.1
298
Normal
-0.1
327
Tumor
-0.1
918
Normal
-0.1
415
Tumor
-0.1
912
Normal
-0.2
1028
Normal
-0.2
482
Normal
-0.2
858
Normal
-0.2
472
Normal
-0.2
212
Normal
-0.2
866
Normal
-0.2
491
Tumor
-0.2
192
Normal
-0.2
186
Normal
-0.2
128
Normal
-0.2
714
Normal
-0.2
785
Tumor
-0.2
1042
Normal
-0.2
1022
Normal
-0.2
1046
Normal
-0.2
356
Normal
-0.2
715
Tumor
-0.2
938
Normal
-0.2
488
Normal
-0.2
1044
Normal
-0.2
926
Normal
-0.2
857
Tumor
-0.2
557
Tumor
-0.2
481
Tumor
-0.2
448
Normal
-0.2
498
Normal
-0.2
161
Tumor
-0.2
494
Normal
-0.2
824
Normal
-0.2
744
Normal
-0.2
196
Normal
-0.2
1026
Normal
-0.2
1014
Normal
-0.2
1041
Tumor
-0.2
342
Normal
-0.2
867
Tumor
-0.2
1043
Tumor
-0.2
546
Normal
-0.2
922
Normal
-0.2
862
Normal
-0.2
483
Tumor
-0.2
1032
Normal
-0.3
492
Normal
-0.3
171
Tumor
-0.3
195
Tumor
-0.3
222
Normal
-0.3
818
Normal
-0.3
1013
Tumor
-0.3
698
Normal
-0.3
283
Tumor
-0.3
537
Tumor
-0.3
981
Tumor
-0.3
484
Normal
-0.3
755
Tumor
-0.3
965
Tumor
-0.3
487
Tumor
-0.4
915
Tumor
-0.4
1015
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
