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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRPPRC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
105.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
89.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
88.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
87.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
81.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
80.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
80.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
79.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
79.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
78.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
74.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
73.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
71.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
71.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
70.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
69.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
67.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
65.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
64.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
63.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
62.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
62.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
62.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
61.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
61.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
61.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
60.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
56.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
53.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
49.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
46.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
46.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
45.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
44.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
42.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
41.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
40.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
34.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
30.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRPPRC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
70.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
66.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
57.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.1
537
Tumor
0.9
435
Tumor
0.8
713
Tumor
0.8
513
Tumor
0.8
491
Tumor
0.7
967
Tumor
0.7
393
Tumor
0.7
567
Tumor
0.7
227
Tumor
0.6
477
Tumor
0.6
351
Tumor
0.6
741
Tumor
0.6
1013
Tumor
0.6
615
Tumor
0.6
1041
Tumor
0.6
685
Tumor
0.5
727
Tumor
0.5
365
Tumor
0.5
127
Tumor
0.5
473
Tumor
0.5
557
Tumor
0.5
743
Tumor
0.5
267
Tumor
0.5
571
Tumor
0.4
411
Tumor
0.4
483
Tumor
0.4
361
Tumor
0.4
423
Tumor
0.4
313
Tumor
0.4
1025
Tumor
0.4
465
Tumor
0.4
367
Tumor
0.4
661
Tumor
0.4
147
Tumor
0.4
357
Tumor
0.4
911
Tumor
0.3
665
Tumor
0.3
951
Tumor
0.3
553
Tumor
0.3
363
Tumor
0.3
953
Tumor
0.3
965
Tumor
0.3
123
Tumor
0.3
867
Tumor
0.3
912
Normal
0.2
257
Tumor
0.2
724
Normal
0.2
745
Tumor
0.2
1043
Tumor
0.2
128
Normal
0.2
777
Tumor
0.2
695
Tumor
0.2
1015
Tumor
0.2
525
Tumor
0.2
462
Normal
0.2
1045
Tumor
0.2
868
Normal
0.2
627
Tumor
0.2
671
Tumor
0.2
271
Tumor
0.2
648
Normal
0.2
863
Tumor
0.2
356
Normal
0.2
641
Tumor
0.2
573
Tumor
0.1
865
Tumor
0.1
738
Normal
0.1
1021
Tumor
0.1
564
Normal
0.1
957
Tumor
0.1
925
Tumor
0.1
285
Tumor
0.1
535
Tumor
0.1
977
Tumor
0.1
746
Normal
0.1
466
Normal
0.1
141
Tumor
0.1
145
Tumor
0.1
636
Normal
0.1
664
Normal
0.1
427
Tumor
0.1
111
Normal
0.1
1046
Normal
0.1
171
Tumor
0.1
436
Normal
0.1
915
Tumor
0.1
527
Tumor
0.1
297
Tumor
0.1
742
Normal
0.1
414
Normal
0.1
125
Tumor
0.1
663
Tumor
0.1
858
Normal
0.1
385
Tumor
0.1
433
Tumor
0.1
786
Normal
0.1
484
Normal
0.1
114
Normal
0.1
464
Normal
0.1
452
Normal
0.1
755
Tumor
0.1
426
Normal
0.0
487
Tumor
0.0
428
Normal
0.0
196
Normal
0.0
723
Tumor
0.0
873
Tumor
0.0
1014
Normal
0.0
424
Normal
0.0
422
Normal
0.0
222
Normal
0.0
162
Normal
0.0
864
Normal
0.0
785
Tumor
0.0
964
Normal
0.0
148
Normal
0.0
666
Normal
0.0
258
Normal
0.0
526
Normal
0.0
528
Normal
0.0
395
Tumor
0.0
298
Normal
0.0
778
Normal
0.0
394
Normal
0.0
982
Normal
0.0
388
Normal
0.0
1022
Normal
0.0
983
Tumor
0.0
474
Normal
0.0
195
Tumor
0.0
647
Tumor
0.0
341
Tumor
0.0
517
Tumor
0.0
342
Normal
0.0
616
Normal
0.0
568
Normal
0.0
851
Tumor
0.0
432
Normal
0.0
463
Tumor
0.0
981
Tumor
0.0
132
Normal
0.0
232
Normal
0.0
697
Tumor
0.0
352
Normal
0.0
1016
Normal
0.0
862
Normal
0.0
514
Normal
0.0
642
Normal
0.0
698
Normal
0.0
882
Normal
0.0
572
Normal
0.0
278
Normal
0.0
1026
Normal
0.0
328
Normal
0.0
944
Normal
0.0
914
Normal
0.0
482
Normal
0.0
923
Tumor
0.0
728
Normal
0.0
523
Tumor
0.0
261
Tumor
0.0
618
Normal
0.0
126
Normal
0.0
756
Normal
0.0
696
Normal
0.0
376
Normal
0.0
1032
Normal
0.0
714
Normal
0.0
534
Normal
0.0
392
Normal
0.0
488
Normal
0.0
938
Normal
0.0
448
Normal
-0.1
883
Tumor
-0.1
922
Normal
-0.1
472
Normal
-0.1
861
Tumor
-0.1
354
Normal
-0.1
124
Normal
-0.1
186
Normal
-0.1
416
Normal
-0.1
172
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
926
Normal
-0.1
878
Normal
-0.1
412
Normal
-0.1
286
Normal
-0.1
913
Tumor
-0.1
662
Normal
-0.1
823
Tumor
-0.1
481
Tumor
-0.1
214
Normal
-0.1
574
Normal
-0.1
546
Normal
-0.1
493
Tumor
-0.1
284
Normal
-0.1
413
Tumor
-0.1
362
Normal
-0.1
722
Normal
-0.1
518
Normal
-0.1
358
Normal
-0.1
715
Tumor
-0.1
142
Normal
-0.1
228
Normal
-0.1
461
Tumor
-0.1
312
Normal
-0.1
558
Normal
-0.1
272
Normal
-0.1
218
Normal
-0.1
396
Normal
-0.1
277
Tumor
-0.1
924
Normal
-0.1
331
Tumor
-0.1
327
Tumor
-0.1
1031
Tumor
-0.1
221
Tumor
-0.1
963
Tumor
-0.1
554
Normal
-0.1
968
Normal
-0.1
952
Normal
-0.1
446
Normal
-0.1
818
Normal
-0.1
387
Tumor
-0.1
984
Normal
-0.1
375
Tumor
-0.1
314
Normal
-0.1
874
Normal
-0.1
366
Normal
-0.2
824
Normal
-0.2
721
Tumor
-0.2
978
Normal
-0.2
471
Tumor
-0.2
635
Tumor
-0.2
112
Tumor
-0.2
956
Normal
-0.2
955
Tumor
-0.2
187
Tumor
-0.2
136
Normal
-0.2
188
Normal
-0.2
456
Normal
-0.2
881
Tumor
-0.2
1042
Normal
-0.2
943
Tumor
-0.2
137
Tumor
-0.2
223
Tumor
-0.2
533
Tumor
-0.2
813
Tumor
-0.2
976
Normal
-0.2
816
Normal
-0.2
1028
Normal
-0.2
494
Normal
-0.2
355
Tumor
-0.2
386
Normal
-0.2
425
Tumor
-0.2
146
Normal
-0.2
468
Normal
-0.2
262
Normal
-0.2
515
Tumor
-0.2
628
Normal
-0.2
434
Normal
-0.2
716
Normal
-0.2
391
Tumor
-0.2
224
Normal
-0.2
268
Normal
-0.2
916
Normal
-0.2
444
Normal
-0.2
686
Normal
-0.2
958
Normal
-0.2
497
Tumor
-0.2
852
Normal
-0.2
918
Normal
-0.2
138
Normal
-0.2
877
Tumor
-0.2
212
Normal
-0.2
353
Tumor
-0.3
191
Tumor
-0.3
332
Normal
-0.3
185
Tumor
-0.3
384
Normal
-0.3
431
Tumor
-0.3
954
Normal
-0.3
516
Normal
-0.3
368
Normal
-0.3
744
Normal
-0.3
672
Normal
-0.3
966
Normal
-0.3
213
Tumor
-0.3
857
Tumor
-0.3
344
Normal
-0.3
538
Normal
-0.3
478
Normal
-0.3
451
Tumor
-0.3
161
Tumor
-0.3
524
Normal
-0.3
814
Normal
-0.3
1044
Normal
-0.3
113
Tumor
-0.3
975
Tumor
-0.4
283
Tumor
-0.4
217
Tumor
-0.4
737
Tumor
-0.4
445
Tumor
-0.4
563
Tumor
-0.4
498
Normal
-0.4
415
Tumor
-0.4
815
Tumor
-0.4
192
Normal
-0.4
131
Tumor
-0.4
383
Tumor
-0.4
135
Tumor
-0.4
467
Tumor
-0.5
884
Normal
-0.5
492
Normal
-0.5
545
Tumor
-0.5
455
Tumor
-0.5
1027
Tumor
-0.5
536
Normal
-0.5
447
Tumor
-0.5
421
Tumor
-0.5
921
Tumor
-0.6
937
Tumor
-0.6
443
Tumor
-0.6
311
Tumor
-0.6
817
Tumor
-0.6
343
Tumor
-0.7
617
Tumor
-0.7
211
Tumor
-0.7
917
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.