MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:38.2 nTPM
GTEx:14.5 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:67.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
2586 Male, age 75, left hemisphere 43.4
1827 Male, age 72, unknown 35.8
2219 Male, age 76, both hemispheres 33.6
2666 Male, age 74, left hemisphere 33.4
2019 Male, age 18, unknown 32.1
1833 Male, age 53, unknown 31.9
1870 Female, age 42, unknown 31.2
2828 Female, age 72, unknown 30.6
1830 Male, age 51, unknown 30.0
2411 Female, age 72, unknown 28.7
Dorsal raphe nucleus
nTPM: 31.2
2298 Female, age 72, unknown 32.2
2016 Female, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 31.3
2047 Male, age 72, unknown 31.2
1828 Male, age 53, unknown 29.6
Inferior colliculus
nTPM: 35.1
2849 Male, age 72, unknown 37.3
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 35.1
1890 Male, age 53, unknown 32.1
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Periaquaductal grey, anterior
nTPM: 38.2
1947 Male, age 18, unknown 40.7
2502 Female, age 75, unknown 39.1
1795 Male, age 51, unknown 34.8
Periaquaductal grey, dorsal
nTPM: 34.5
1840 Male, age 53, unknown 39.1
2850 Male, age 76, both hemispheres 34.9
1831 Male, age 72, unknown 32.4
2464 Female, age 72, unknown 31.9
Periaquaductal grey, lateral
nTPM: 33.4
2272 Male, age 74, both hemispheres 34.2
2140 Male, age 76, both hemispheres 33.3
2053 Male, age 18, unknown 32.6
Pretectal area
nTPM: 35.7
2007 Male, age 72, unknown 40.8
1816 Male, age 51, unknown 40.6
1817 Female, age 42, unknown 39.6
1815 Male, age 53, unknown 38.1
1944 Female, age 72, unknown 37.5
2825 Male, age 18, unknown 33.5
2407 Male, age 75, both hemispheres 33.4
2667 Female, age 75, unknown 33.4
2224 Female, age 72, unknown 32.8
2273 Male, age 74, both hemispheres 32.2
2316 Male, age 76, right hemisphere 31.1
Red nucleus
nTPM: 30.8
2584 Male, age 75, left hemisphere 35.3
1821 Female, age 72, unknown 33.6
2725 Female, age 75, unknown 33.0
2785 Male, age 18, unknown 32.0
1865 Male, age 51, unknown 31.5
2503 Female, age 72, unknown 30.9
1954 Female, age 42, unknown 30.3
2769 Male, age 72, unknown 29.4
2588 Male, age 74, left hemisphere 29.3
2823 Male, age 76, right hemisphere 28.8
2227 Male, age 72, unknown 28.4
1904 Male, age 53, unknown 27.2
Substantia nigra
nTPM: 34.4
1941 Male, age 53, unknown 38.6
2241 Male, age 72, unknown 37.9
1916 Female, age 42, unknown 35.6
1889 Female, age 72, unknown 34.9
2665 Male, age 74, both hemispheres 34.8
2583 Male, age 75, right hemisphere 33.1
1851 Male, age 51, unknown 32.9
2409 Female, age 72, unknown 32.6
2590 Female, age 75, unknown 31.8
2699 Male, age 18, unknown 31.8
Superior colliculus
nTPM: 33.5
2664 Male, age 75, both hemispheres 39.0
2261 Male, age 18, unknown 36.1
1796 Male, age 53, unknown 35.0
2668 Female, age 75, unknown 34.8
1839 Male, age 51, unknown 34.6
1895 Male, age 76, right hemisphere 34.2
2087 Female, age 72, unknown 32.3
2587 Male, age 74, left hemisphere 31.8
1913 Female, age 42, unknown 30.3
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 30.6
1915 Female, age 42, unknown 32.6
1942 Male, age 51, unknown 31.5
2218 Male, age 76, both hemispheres 31.5
2223 Female, age 72, unknown 29.9
2410 Female, age 72, unknown 29.7
2021 Male, age 53, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 139

Max nTPM: 33.2
Min nTPM: 4.8
Std nTPM: 3.7
Median nTPM: 14.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 27.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 22.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 19.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.8
FF:10158-103A5 76 years, female 69.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.6
Samples: 4

Max nTPM: 54.8
Min nTPM: 43.2
Sample A Female 54.8
Sample B Female 45.9
Sample C Male 54.6
Sample D Male 43.2
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 68.7
Min nTPM: 49.8
Sample A Female 49.8
Sample B Female 52.8
Sample C Male 68.7
Sample D Male 61.0
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 58.2
Min nTPM: 47.4
Sample B Female 47.4
Sample C Male 58.2
Sample D Male 50.6
Superior colliculi
nTPM: 57.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 46.1
Sample A Female 58.2
Sample B Female 46.1
Sample C Male 66.1
Sample D Male 59.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 67.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.8
Samples: 4

Max nTPM: 72.0
Min nTPM: 62.2
Sample A Male 62.2
Sample B Male 72.0
Sample C Female 71.5
Sample D Female 65.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
71529779 Antisense, RP_050913_04_H10, Mouse strain C57BL/6J (56 days, male) 1.0

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