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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTCA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
62.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.3
147
Tumor
1.1
517
Tumor
1.0
123
Tumor
0.8
957
Tumor
0.7
425
Tumor
0.7
777
Tumor
0.7
537
Tumor
0.6
131
Tumor
0.5
1021
Tumor
0.5
443
Tumor
0.4
327
Tumor
0.4
125
Tumor
0.4
313
Tumor
0.4
713
Tumor
0.4
745
Tumor
0.3
741
Tumor
0.3
491
Tumor
0.3
145
Tumor
0.3
395
Tumor
0.3
427
Tumor
0.3
1015
Tumor
0.3
851
Tumor
0.3
1013
Tumor
0.3
915
Tumor
0.3
137
Tumor
0.3
727
Tumor
0.3
297
Tumor
0.3
431
Tumor
0.2
925
Tumor
0.2
527
Tumor
0.2
432
Normal
0.2
571
Tumor
0.2
737
Tumor
0.2
1025
Tumor
0.2
545
Tumor
0.2
525
Tumor
0.2
573
Tumor
0.2
647
Tumor
0.2
482
Normal
0.2
911
Tumor
0.2
191
Tumor
0.2
665
Tumor
0.2
211
Tumor
0.2
127
Tumor
0.1
451
Tumor
0.1
965
Tumor
0.1
746
Normal
0.1
436
Normal
0.1
867
Tumor
0.1
981
Tumor
0.1
483
Tumor
0.1
724
Normal
0.1
515
Tumor
0.1
722
Normal
0.1
663
Tumor
0.1
426
Normal
0.1
414
Normal
0.1
283
Tumor
0.1
714
Normal
0.1
756
Normal
0.1
1046
Normal
0.1
257
Tumor
0.1
383
Tumor
0.1
818
Normal
0.1
697
Tumor
0.1
778
Normal
0.1
446
Normal
0.1
738
Normal
0.1
481
Tumor
0.1
912
Normal
0.1
367
Tumor
0.1
865
Tumor
0.1
343
Tumor
0.1
312
Normal
0.1
424
Normal
0.1
332
Normal
0.1
465
Tumor
0.1
723
Tumor
0.1
786
Normal
0.1
278
Normal
0.1
567
Tumor
0.1
943
Tumor
0.1
361
Tumor
0.1
477
Tumor
0.0
223
Tumor
0.0
528
Normal
0.0
298
Normal
0.0
862
Normal
0.0
422
Normal
0.0
434
Normal
0.0
924
Normal
0.0
964
Normal
0.0
468
Normal
0.0
568
Normal
0.0
428
Normal
0.0
365
Tumor
0.0
456
Normal
0.0
953
Tumor
0.0
686
Normal
0.0
666
Normal
0.0
171
Tumor
0.0
196
Normal
0.0
952
Normal
0.0
815
Tumor
0.0
866
Normal
0.0
311
Tumor
0.0
392
Normal
0.0
662
Normal
0.0
452
Normal
0.0
636
Normal
0.0
396
Normal
0.0
487
Tumor
0.0
858
Normal
0.0
393
Tumor
0.0
616
Normal
0.0
185
Tumor
0.0
128
Normal
0.0
444
Normal
0.0
558
Normal
0.0
923
Tumor
0.0
386
Normal
0.0
1014
Normal
0.0
172
Normal
0.0
868
Normal
0.0
824
Normal
0.0
863
Tumor
0.0
462
Normal
0.0
1028
Normal
0.0
1026
Normal
0.0
744
Normal
0.0
388
Normal
0.0
716
Normal
0.0
564
Normal
0.0
628
Normal
0.0
627
Tumor
0.0
864
Normal
0.0
664
Normal
0.0
978
Normal
0.0
884
Normal
0.0
728
Normal
0.0
188
Normal
0.0
218
Normal
0.0
387
Tumor
0.0
394
Normal
0.0
944
Normal
0.0
328
Normal
0.0
214
Normal
0.0
464
Normal
0.0
721
Tumor
0.0
375
Tumor
0.0
984
Normal
0.0
162
Normal
0.0
344
Normal
0.0
874
Normal
0.0
956
Normal
0.0
286
Normal
0.0
574
Normal
0.0
142
Normal
0.0
187
Tumor
0.0
967
Tumor
0.0
368
Normal
0.0
514
Normal
0.0
926
Normal
0.0
113
Tumor
0.0
883
Tumor
0.0
488
Normal
0.0
356
Normal
0.0
1044
Normal
0.0
161
Tumor
0.0
314
Normal
0.0
217
Tumor
0.0
411
Tumor
0.0
938
Normal
0.0
535
Tumor
0.0
112
Tumor
0.0
366
Normal
0.0
341
Tumor
0.0
224
Normal
0.0
534
Normal
0.0
698
Normal
0.0
467
Tumor
0.0
148
Normal
-0.1
228
Normal
-0.1
954
Normal
-0.1
146
Normal
-0.1
448
Normal
-0.1
416
Normal
-0.1
195
Tumor
-0.1
1016
Normal
-0.1
715
Tumor
-0.1
212
Normal
-0.1
376
Normal
-0.1
1022
Normal
-0.1
132
Normal
-0.1
391
Tumor
-0.1
352
Normal
-0.1
1041
Tumor
-0.1
742
Normal
-0.1
966
Normal
-0.1
557
Tumor
-0.1
533
Tumor
-0.1
696
Normal
-0.1
572
Normal
-0.1
114
Normal
-0.1
695
Tumor
-0.1
466
Normal
-0.1
518
Normal
-0.1
882
Normal
-0.1
138
Normal
-0.1
922
Normal
-0.1
227
Tumor
-0.1
231
Tumor
-0.1
126
Normal
-0.1
816
Normal
-0.1
384
Normal
-0.1
1032
Normal
-0.1
617
Tumor
-0.1
192
Normal
-0.1
648
Normal
-0.1
362
Normal
-0.1
526
Normal
-0.1
455
Tumor
-0.1
186
Normal
-0.1
554
Normal
-0.1
513
Tumor
-0.1
111
Normal
-0.1
268
Normal
-0.1
642
Normal
-0.1
873
Tumor
-0.1
852
Normal
-0.1
463
Tumor
-0.1
135
Tumor
-0.1
213
Tumor
-0.1
743
Tumor
-0.1
672
Normal
-0.1
861
Tumor
-0.1
968
Normal
-0.1
976
Normal
-0.1
916
Normal
-0.1
914
Normal
-0.1
136
Normal
-0.1
536
Normal
-0.1
262
Normal
-0.1
813
Tumor
-0.1
364
Normal
-0.1
823
Tumor
-0.1
461
Tumor
-0.1
222
Normal
-0.1
351
Tumor
-0.1
563
Tumor
-0.1
958
Normal
-0.1
472
Normal
-0.1
423
Tumor
-0.1
951
Tumor
-0.1
1042
Normal
-0.1
421
Tumor
-0.1
331
Tumor
-0.1
615
Tumor
-0.1
284
Normal
-0.1
271
Tumor
-0.1
342
Normal
-0.1
447
Tumor
-0.1
918
Normal
-0.1
814
Normal
-0.1
1045
Tumor
-0.1
685
Tumor
-0.1
878
Normal
-0.1
258
Normal
-0.1
661
Tumor
-0.1
546
Normal
-0.1
618
Normal
-0.1
977
Tumor
-0.1
385
Tumor
-0.1
478
Normal
-0.1
516
Normal
-0.1
272
Normal
-0.1
955
Tumor
-0.1
982
Normal
-0.2
524
Normal
-0.2
538
Normal
-0.2
755
Tumor
-0.2
354
Normal
-0.2
494
Normal
-0.2
413
Tumor
-0.2
261
Tumor
-0.2
124
Normal
-0.2
498
Normal
-0.2
433
Tumor
-0.2
921
Tumor
-0.2
358
Normal
-0.2
474
Normal
-0.2
232
Normal
-0.2
357
Tumor
-0.2
975
Tumor
-0.2
785
Tumor
-0.2
937
Tumor
-0.2
353
Tumor
-0.2
221
Tumor
-0.2
917
Tumor
-0.2
1043
Tumor
-0.2
484
Normal
-0.2
881
Tumor
-0.2
635
Tumor
-0.2
412
Normal
-0.2
913
Tumor
-0.2
877
Tumor
-0.2
492
Normal
-0.3
963
Tumor
-0.3
523
Tumor
-0.3
445
Tumor
-0.3
435
Tumor
-0.3
415
Tumor
-0.3
857
Tumor
-0.3
473
Tumor
-0.3
355
Tumor
-0.3
141
Tumor
-0.3
817
Tumor
-0.3
277
Tumor
-0.3
493
Tumor
-0.3
641
Tumor
-0.4
363
Tumor
-0.4
553
Tumor
-0.4
497
Tumor
-0.4
671
Tumor
-0.4
471
Tumor
-0.5
1031
Tumor
-0.5
983
Tumor
-0.5
285
Tumor
-0.6
267
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
