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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI44L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
110.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
77.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
63.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
55.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
50.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI44L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
118.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
3.7
327
Tumor
3.4
467
Tumor
3.2
283
Tumor
2.7
343
Tumor
2.0
1015
Tumor
1.6
536
Normal
1.6
213
Tumor
1.4
814
Normal
1.4
311
Tumor
1.2
262
Normal
1.2
557
Tumor
1.1
861
Tumor
1.0
218
Normal
1.0
434
Normal
1.0
416
Normal
0.9
344
Normal
0.9
261
Tumor
0.8
482
Normal
0.7
396
Normal
0.7
217
Tumor
0.7
478
Normal
0.6
354
Normal
0.6
352
Normal
0.5
524
Normal
0.5
858
Normal
0.5
558
Normal
0.5
978
Normal
0.5
813
Tumor
0.5
284
Normal
0.5
1046
Normal
0.4
481
Tumor
0.4
415
Tumor
0.4
1045
Tumor
0.4
452
Normal
0.4
535
Tumor
0.4
386
Normal
0.3
447
Tumor
0.3
666
Normal
0.3
448
Normal
0.3
136
Normal
0.3
815
Tumor
0.3
864
Normal
0.3
862
Normal
0.2
376
Normal
0.2
128
Normal
0.2
472
Normal
0.2
111
Normal
0.2
451
Tumor
0.1
664
Normal
0.1
268
Normal
0.1
258
Normal
0.1
857
Tumor
0.1
468
Normal
0.1
1043
Tumor
0.0
538
Normal
0.0
196
Normal
0.0
966
Normal
0.0
214
Normal
0.0
222
Normal
0.0
462
Normal
0.0
364
Normal
0.0
914
Normal
-0.1
114
Normal
-0.1
272
Normal
-0.1
913
Tumor
-0.1
874
Normal
-0.1
746
Normal
-0.1
257
Tumor
-0.1
142
Normal
-0.1
1016
Normal
-0.1
568
Normal
-0.1
267
Tumor
-0.2
192
Normal
-0.2
433
Tumor
-0.2
391
Tumor
-0.2
388
Normal
-0.2
728
Normal
-0.2
456
Normal
-0.2
572
Normal
-0.2
328
Normal
-0.2
446
Normal
-0.3
195
Tumor
-0.3
466
Normal
-0.3
912
Normal
-0.3
648
Normal
-0.3
526
Normal
-0.3
358
Normal
-0.3
211
Tumor
-0.3
465
Tumor
-0.3
464
Normal
-0.3
984
Normal
-0.3
877
Tumor
-0.3
534
Normal
-0.3
232
Normal
-0.3
474
Normal
-0.4
1044
Normal
-0.4
943
Tumor
-0.4
686
Normal
-0.4
228
Normal
-0.4
1014
Normal
-0.4
516
Normal
-0.4
665
Tumor
-0.4
881
Tumor
-0.5
982
Normal
-0.5
231
Tumor
-0.5
816
Normal
-0.5
968
Normal
-0.5
952
Normal
-0.5
298
Normal
-0.5
286
Normal
-0.5
574
Normal
-0.5
981
Tumor
-0.5
723
Tumor
-0.5
392
Normal
-0.5
342
Normal
-0.6
716
Normal
-0.6
387
Tumor
-0.6
127
Tumor
-0.6
672
Normal
-0.6
528
Normal
-0.6
786
Normal
-0.6
271
Tumor
-0.6
977
Tumor
-0.6
564
Normal
-0.6
662
Normal
-0.6
527
Tumor
-0.6
882
Normal
-0.6
363
Tumor
-0.6
715
Tumor
-0.6
455
Tumor
-0.6
722
Normal
-0.6
112
Tumor
-0.6
432
Normal
-0.7
356
Normal
-0.7
713
Tumor
-0.7
661
Tumor
-0.7
744
Normal
-0.7
851
Tumor
-0.7
124
Normal
-0.7
221
Tumor
-0.7
696
Normal
-0.7
463
Tumor
-0.7
125
Tumor
-0.7
362
Normal
-0.7
412
Normal
-0.7
714
Normal
-0.7
224
Normal
-0.7
911
Tumor
-0.8
477
Tumor
-0.8
823
Tumor
-0.8
191
Tumor
-0.8
375
Tumor
-0.8
366
Normal
-0.8
132
Normal
-0.8
368
Normal
-0.8
383
Tumor
-0.8
297
Tumor
-0.8
514
Normal
-0.8
353
Tumor
-0.8
883
Tumor
-0.8
135
Tumor
-0.8
698
Normal
-0.8
983
Tumor
-0.8
394
Normal
-0.8
126
Normal
-0.8
395
Tumor
-0.8
554
Normal
-0.8
537
Tumor
-0.8
878
Normal
-0.9
663
Tumor
-0.9
393
Tumor
-0.9
141
Tumor
-0.9
227
Tumor
-0.9
444
Normal
-0.9
727
Tumor
-0.9
351
Tumor
-0.9
471
Tumor
-0.9
212
Normal
-1.0
957
Tumor
-1.0
884
Normal
-1.0
546
Normal
-1.0
756
Normal
-1.0
724
Normal
-1.0
824
Normal
-1.0
563
Tumor
-1.0
138
Normal
-1.0
473
Tumor
-1.0
571
Tumor
-1.0
145
Tumor
-1.0
938
Normal
-1.1
1013
Tumor
-1.1
745
Tumor
-1.1
721
Tumor
-1.1
488
Normal
-1.1
866
Normal
-1.1
647
Tumor
-1.1
223
Tumor
-1.1
873
Tumor
-1.1
146
Normal
-1.1
778
Normal
-1.1
944
Normal
-1.1
332
Normal
-1.1
695
Tumor
-1.1
553
Tumor
-1.1
461
Tumor
-1.1
671
Tumor
-1.1
868
Normal
-1.1
385
Tumor
-1.1
525
Tumor
-1.1
278
Normal
-1.1
411
Tumor
-1.2
697
Tumor
-1.2
954
Normal
-1.2
518
Normal
-1.2
314
Normal
-1.2
685
Tumor
-1.2
494
Normal
-1.2
738
Normal
-1.2
953
Tumor
-1.2
742
Normal
-1.2
958
Normal
-1.2
436
Normal
-1.3
976
Normal
-1.3
515
Tumor
-1.3
852
Normal
-1.3
573
Tumor
-1.3
964
Normal
-1.3
818
Normal
-1.3
741
Tumor
-1.3
513
Tumor
-1.3
785
Tumor
-1.4
567
Tumor
-1.4
517
Tumor
-1.4
545
Tumor
-1.4
123
Tumor
-1.4
277
Tumor
-1.4
341
Tumor
-1.4
498
Normal
-1.4
137
Tumor
-1.4
312
Normal
-1.4
955
Tumor
-1.4
357
Tumor
-1.4
523
Tumor
-1.5
435
Tumor
-1.5
384
Normal
-1.5
367
Tumor
-1.5
951
Tumor
-1.5
755
Tumor
-1.5
865
Tumor
-1.6
743
Tumor
-1.6
777
Tumor
-1.6
533
Tumor
-1.6
737
Tumor
-1.6
963
Tumor
-1.6
131
Tumor
-1.7
431
Tumor
-1.7
867
Tumor
-1.7
484
Normal
-1.7
331
Tumor
-1.8
817
Tumor
-1.8
443
Tumor
-1.8
967
Tumor
-1.8
365
Tumor
-1.8
863
Tumor
-1.8
445
Tumor
-1.8
493
Tumor
-1.9
361
Tumor
-1.9
937
Tumor
-2.0
956
Normal
-2.0
965
Tumor
-2.0
285
Tumor
-2.2
975
Tumor
-2.2
355
Tumor
-2.2
483
Tumor
-2.4
313
Tumor
-2.5
487
Tumor
-2.5
497
Tumor
-2.7
492
Normal
-2.7
491
Tumor
-2.8
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
